Mitochondrial networks through the lens of mathematics.

IF 2 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Physical biology Pub Date : 2023-07-14 DOI:10.1088/1478-3975/acdcdb
Greyson R Lewis, Wallace F Marshall
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Abstract

Mitochondria serve a wide range of functions within cells, most notably via their production of ATP. Although their morphology is commonly described as bean-like, mitochondria often form interconnected networks within cells that exhibit dynamic restructuring through a variety of physical changes. Further, though relationships between form and function in biology are well established, the extant toolkit for understanding mitochondrial morphology is limited. Here, we emphasize new and established methods for quantitatively describing mitochondrial networks, ranging from unweighted graph-theoretic representations to multi-scale approaches from applied topology, in particular persistent homology. We also show fundamental relationships between mitochondrial networks, mathematics, and physics, using ideas of graph planarity and statistical mechanics to better understand the full possible morphological space of mitochondrial network structures. Lastly, we provide suggestions for how examination of mitochondrial network form through the language of mathematics can inform biological understanding, and vice versa.

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数学视角下的线粒体网络。
线粒体在细胞内具有广泛的功能,最显著的是通过产生ATP。尽管线粒体的形态通常被描述为豆状,但它们通常在细胞内形成相互连接的网络,通过各种物理变化表现出动态重组。此外,尽管生物学中形式和功能之间的关系已经很好地建立起来,但现有的理解线粒体形态的工具包是有限的。在这里,我们强调了定量描述线粒体网络的新方法和已建立的方法,从未加权的图论表示到应用拓扑的多尺度方法,特别是持久同源性。我们还展示了线粒体网络、数学和物理学之间的基本关系,使用图平面性和统计力学的思想来更好地理解线粒体网络结构的全部可能形态空间。最后,我们提出了通过数学语言检查线粒体网络形式如何为生物学理解提供信息的建议,反之亦然。
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来源期刊
Physical biology
Physical biology 生物-生物物理
CiteScore
4.20
自引率
0.00%
发文量
50
审稿时长
3 months
期刊介绍: Physical Biology publishes articles in the broad interdisciplinary field bridging biology with the physical sciences and engineering. This journal focuses on research in which quantitative approaches – experimental, theoretical and modeling – lead to new insights into biological systems at all scales of space and time, and all levels of organizational complexity. Physical Biology accepts contributions from a wide range of biological sub-fields, including topics such as: molecular biophysics, including single molecule studies, protein-protein and protein-DNA interactions subcellular structures, organelle dynamics, membranes, protein assemblies, chromosome structure intracellular processes, e.g. cytoskeleton dynamics, cellular transport, cell division systems biology, e.g. signaling, gene regulation and metabolic networks cells and their microenvironment, e.g. cell mechanics and motility, chemotaxis, extracellular matrix, biofilms cell-material interactions, e.g. biointerfaces, electrical stimulation and sensing, endocytosis cell-cell interactions, cell aggregates, organoids, tissues and organs developmental dynamics, including pattern formation and morphogenesis physical and evolutionary aspects of disease, e.g. cancer progression, amyloid formation neuronal systems, including information processing by networks, memory and learning population dynamics, ecology, and evolution collective action and emergence of collective phenomena.
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