Transformations between rotational and translational invariants formulated in reciprocal spaces

IF 3.5 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Structural Biology: X Pub Date : 2023-01-01 DOI:10.1016/j.yjsbx.2023.100089
Philip R. Baldwin
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Abstract

Correlation functions play an important role in the theoretical underpinnings of many disparate areas of the physical sciences: in particular, scattering theory. More recently, they have become useful in the classification of objects in areas such as computer vision and our area of cryoEM. Our primary classification scheme in the cryoEM image processing system, EMAN2, is now based on third order invariants formulated in Fourier space. This allows a factor of 8 speed up in the two classification procedures inherent in our software pipeline, because it allows for classification without the need for computationally costly alignment procedures.

In this work, we address several formal and practical aspects of such multispectral invariants. We show that we can formulate such invariants in the representation in which the original signal is most compact. We explicitly construct transformations between invariants in different orientations for arbitrary order of correlation functions and dimension. We demonstrate that third order invariants distinguish 2D mirrored patterns (unlike the radial power spectrum), which is a fundamental aspects of its classification efficacy. We show the limitations of 3rd order invariants also, by giving an example of a wide family of patterns with identical (vanishing) set of 3rd order invariants. For sufficiently rich patterns, the third order invariants should distinguish typical images, textures and patterns.

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在互反空间中表述的旋转不变量和平移不变量之间的变换
相关函数在物理科学的许多不同领域的理论基础中发挥着重要作用:特别是散射理论。最近,它们在计算机视觉和冷冻电镜等领域的物体分类中变得有用。我们在cryoEM图像处理系统中的主要分类方案EMAN2现在基于傅立叶空间中公式化的三阶不变量。这使得我们的软件管道中固有的两个分类过程的速度提高了8倍,因为它允许在不需要计算成本高昂的对齐过程的情况下进行分类。在这项工作中,我们讨论了这种多光谱不变量的几个形式和实际方面。我们证明了我们可以在原始信号最紧凑的表示中公式化这种不变量。对于任意阶的相关函数和维数,我们显式地构造了不同方向上不变量之间的变换。我们证明了三阶不变量区分2D镜像模式(与径向功率谱不同),这是其分类功效的一个基本方面。我们还展示了三阶不变量的局限性,通过给出一个具有相同(消失)三阶不变量集的广泛模式族的例子。对于足够丰富的模式,三阶不变量应该区分典型的图像、纹理和模式。
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来源期刊
Journal of Structural Biology: X
Journal of Structural Biology: X Biochemistry, Genetics and Molecular Biology-Structural Biology
CiteScore
6.50
自引率
0.00%
发文量
20
审稿时长
62 days
期刊最新文献
Corrigendum to “Minimizing ice contamination during specimen preparation for cryo-soft X-ray tomography and cryo-electron tomography” [J. Struct. Biol.: X 10(2024) 100113] Editorial by Natalie Reznikov [for Buss et al., “Hierarchical organization of bone in three dimensions: A twist of twists” (2022)] Structural analysis of the stable form of fibroblast growth factor 2 – FGF2-STAB Localization of albumin with correlative super resolution light- and electron microscopy in the kidney Minimizing ice contamination during specimen preparation for cryo-soft X-ray tomography and cryo-electron tomography
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