A generic schema and data collection forms applicable to diverse entomological studies of mosquitoes.

Q2 Decision Sciences Source Code for Biology and Medicine Pub Date : 2016-03-28 eCollection Date: 2016-01-01 DOI:10.1186/s13029-016-0050-1
Samson S Kiware, Tanya L Russell, Zacharia J Mtema, Alpha D Malishee, Prosper Chaki, Dickson Lwetoijera, Javan Chanda, Dingani Chinula, Silas Majambere, John E Gimnig, Thomas A Smith, Gerry F Killeen
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Abstract

Background: Standardized schemas, databases, and public data repositories are needed for the studies of malaria vectors that encompass a remarkably diverse array of designs and rapidly generate large data volumes, often in resource-limited tropical settings lacking specialized software or informatics support.

Results: Data from the majority of mosquito studies conformed to a generic schema, with data collection forms recording the experimental design, sorting of collections, details of sample pooling or subdivision, and additional observations. Generically applicable forms with standardized attribute definitions enabled rigorous, consistent data and sample management with generic software and minimal expertise. Forms use now includes 20 experiments, 8 projects, and 15 users at 3 research and control institutes in 3 African countries, resulting in 11 peer-reviewed publications.

Conclusion: We have designed generic data schema that can be used to develop paper or electronic based data collection forms depending on the availability of resources. We have developed paper-based data collection forms that can be used to collect data from majority of entomological studies across multiple study areas using standardized data formats. Data recorded on these forms with standardized formats can be entered and linked with any relational database software. These informatics tools are recommended because they ensure that medical entomologists save time, improve data quality, and data collected and shared across multiple studies is in standardized formats hence increasing research outputs.

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适用于各种蚊虫学研究的通用模式和数据收集表。
背景:对疟疾病媒的研究需要标准化的模式、数据库和公共数据储存库,因为这些研究包含多种多样的设计,并能迅速产生大量数据,而且通常是在资源有限、缺乏专业软件或信息学支持的热带环境中进行:结果:大多数蚊虫研究的数据符合通用模式,数据收集表格记录了实验设计、收集分类、样本集中或细分的细节以及其他观察结果。通用表格具有标准化的属性定义,只需使用通用软件和最低限度的专业知识,就能实现严格、一致的数据和样本管理。目前,在非洲 3 个国家的 3 个研究与控制机构中,有 20 项实验、8 个项目和 15 名用户使用了表格,并发表了 11 篇经同行评审的论文:我们设计了通用数据模式,可用于开发纸质或电子数据收集表,具体取决于资源的可用性。我们开发了纸质数据收集表,可用于使用标准化数据格式从多个研究领域的大多数昆虫学研究中收集数据。在这些采用标准化格式的表格上记录的数据可以输入任何关系数据库软件并与之连接。推荐使用这些信息学工具的原因是,它们可确保医学昆虫学家节省时间、提高数据质量,并以标准化格式收集和共享多项研究的数据,从而提高研究成果。
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来源期刊
Source Code for Biology and Medicine
Source Code for Biology and Medicine Decision Sciences-Information Systems and Management
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期刊介绍: Source Code for Biology and Medicine is a peer-reviewed open access, online journal that publishes articles on source code employed over a wide range of applications in biology and medicine. The journal"s aim is to publish source code for distribution and use in the public domain in order to advance biological and medical research. Through this dissemination, it may be possible to shorten the time required for solving certain computational problems for which there is limited source code availability or resources.
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