Proteomic insights into Helcococcus kunzii in a diabetic foot ulcer-like environment.

IF 2.1 4区 生物学 Q3 BIOCHEMICAL RESEARCH METHODS PROTEOMICS – Clinical Applications Pub Date : 2023-07-01 DOI:10.1002/prca.202200069
Benjamin A R N Durand, Catherine Dunyach-Remy, Oumayma El Kaddouri, Jean-Philippe Lavigne, Jean Armengaud, Lucia Grenga
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Abstract

Purpose: Helcococcus kunzii is a skin commensal, Gram-positive bacterium, mostly isolated from infected chronic wounds. This opportunistic pathogen is usually co-isolated with Staphylococcus aureus. The present dataset explores the production and secretion of H. kunzii bacterial virulence interacting proteins in a growth medium mimicking chronic wounds in exponential and stationary growth phases.

Experimental design: The H. kunzii cellular proteome and exoproteome were assessed by analyzing three biological replicates per condition tested. Samples were analyzed using a Q-Exactive HF mass spectrometer. Comparative and functional analyses were performed to profile the identified protein set.

Results: The H. kunzii's cellular proteome encompassed 969 proteins, among which 64 and 53 were specifically identified in the exponential and stationary phase of growth, respectively. Its exoproteome comprised 58 proteins, among which 16 and 14 were characteristic of each growth stage. Metabolic differences between the two phases of growth are discussed. Besides, the production of previously shortlisted and novel putative H. kunzii targets involved in modulating the virulence of S. aureus is investigated.

Conclusion and clinical relevance: This work, pioneering the study of H. kunzii physiology in a chronic wound-like environment, should assist future research on this opportunistic pathogen and the search for innovative approaches for wound management.

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在糖尿病足溃疡样环境中对昆兹Helcococcus kunzii的蛋白质组学研究。
目的:昆子Helcococcus kunzi是一种皮肤共生革兰氏阳性细菌,多从慢性伤口感染中分离。这种机会致病菌通常与金黄色葡萄球菌共分离。目前的数据集探讨了在指数和平稳生长阶段模拟慢性伤口的生长培养基中,孔兹胞杆菌毒力相互作用蛋白的产生和分泌。实验设计:通过分析每组条件下的3个生物重复,对孔鼠细胞蛋白质组和外蛋白质组进行评估。样品采用Q-Exactive HF质谱仪进行分析。对鉴定的蛋白质进行了比较和功能分析。结果:昆子鸡细胞蛋白质组共包含969个蛋白,其中在生长指数期特异性鉴定64个,在生长稳定期特异性鉴定53个。其外蛋白质组共包含58个蛋白,其中各生长阶段特有的蛋白有16个和14个。讨论了两个生长阶段的代谢差异。此外,还研究了先前入围的和新的假定的参与调节金黄色葡萄球菌毒力的kunzii靶点的产生。结论及临床意义:本研究开创了慢性伤口样环境下的昆氏嗜血杆菌生理学研究,有助于未来对这种机会性病原体的研究和寻找创新的伤口管理方法。
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来源期刊
PROTEOMICS – Clinical Applications
PROTEOMICS – Clinical Applications 医学-生化研究方法
CiteScore
5.20
自引率
5.00%
发文量
50
审稿时长
1 months
期刊介绍: PROTEOMICS - Clinical Applications has developed into a key source of information in the field of applying proteomics to the study of human disease and translation to the clinic. With 12 issues per year, the journal will publish papers in all relevant areas including: -basic proteomic research designed to further understand the molecular mechanisms underlying dysfunction in human disease -the results of proteomic studies dedicated to the discovery and validation of diagnostic and prognostic disease biomarkers -the use of proteomics for the discovery of novel drug targets -the application of proteomics in the drug development pipeline -the use of proteomics as a component of clinical trials.
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