超越桌面:通过网络进行实用生物图像分析的前景。

IF 2.8 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY Frontiers in bioinformatics Pub Date : 2023-07-25 eCollection Date: 2023-01-01 DOI:10.3389/fbinf.2023.1233748
Wei Ouyang, Kevin W Eliceiri, Beth A Cimini
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引用次数: 0

摘要

随着生物成像技术的飞速发展,图像数据也越来越复杂,因此有必要重新评估传统的生物图像分析方法及其可访问性。这一观点强调了我们的信念,即从基于桌面的工具过渡到基于网络的生物图像分析,可以为提高可访问性、加强协作和简化工作流程带来巨大的机遇。我们概述了潜在的好处,如减少本地计算需求和解决常见挑战,包括软件安装问题和有限的可重复性。此外,我们还探讨了网络工具的现状、实施过程中的障碍以及科学界集体参与推动这一转变的意义。考虑到数据管理的潜在障碍和复杂性,我们建议采用选择性原型开发和大规模工作流程应用相结合的方法,以达到最佳使用效果。采用基于网络的生物图像分析可为生命科学界加速生物研究铺平道路,为更具协作性、效率和民主化的科学提供一个强大的平台。
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Moving beyond the desktop: prospects for practical bioimage analysis via the web.

As biological imaging continues to rapidly advance, it results in increasingly complex image data, necessitating a reevaluation of conventional bioimage analysis methods and their accessibility. This perspective underscores our belief that a transition from desktop-based tools to web-based bioimage analysis could unlock immense opportunities for improved accessibility, enhanced collaboration, and streamlined workflows. We outline the potential benefits, such as reduced local computational demands and solutions to common challenges, including software installation issues and limited reproducibility. Furthermore, we explore the present state of web-based tools, hurdles in implementation, and the significance of collective involvement from the scientific community in driving this transition. In acknowledging the potential roadblocks and complexity of data management, we suggest a combined approach of selective prototyping and large-scale workflow application for optimal usage. Embracing web-based bioimage analysis could pave the way for the life sciences community to accelerate biological research, offering a robust platform for a more collaborative, efficient, and democratized science.

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