Qian Wu, Yuanyuan Huang, Xiangya Kong, Ben Jia, Xiaoting Lu, Yunqin Chen, Zechi Huang, Yuan-Yuan Li, Wentao Dai
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引用次数: 0
摘要
为了帮助生物学、医学、化学和材料科学领域的研究人员方便地使用脂质组学数据,迫切需要开发一个平台,为人类脂质代谢和以脂质为中心的组学分析工具提供系统的知识库。DBLiPro是一个用户友好的网络服务器,允许访问人类代谢相关的脂质和蛋白质知识数据库,以及脂质组学、转录组学和蛋白质组学数据的交互式生物信息学综合分析工作流程。在DBLiPro中,知识库部分中有3109种脂质相关蛋白(LAPs)和2098种脂质代谢产物,它们从Uniprot、Kyoto Encyclopedia of Genes and Genomes(KEGG)获得,并由知识库部分的其他公共资源(如RaftPro和PubChem)的信息进一步注释。DBLiPro为脂质组学、转录组学、蛋白质组学及其集成的多组学分析提供了一个循序渐进的交互式分析工作流程,重点关注人类脂质代谢。总之,DBLiPro能够帮助用户发现人类脂质代谢中的关键分子(脂质和蛋白质),并根据他们自己的组学数据研究脂质蛋白功能的潜在机制。DBLiPro可在http://lipid.cloudna.cn/home.
DBLiPro: A Database for Lipids and Proteins in Human Lipid Metabolism.
To help researchers in the field of biology, medicine, chemistry, and materials science to use lipidomic data conveniently, there is an urgent need to develop a platform that provides a systematic knowledgebase of human lipid metabolism and lipidome-centric omics analysis tools. DBLiPro is a user-friendly webserver allowing for access to human metabolism-related lipids and proteins knowledge database and an interactive bioinformatics integrative analysis workflow for lipidomics, transcriptomics, and proteomics data. In DBLiPro, there are 3109 lipid-associated proteins (LAPs) and 2098 lipid metabolites in the knowledge base section, which were obtained from Uniprot, Kyoto Encyclopedia of Genes and Genomes (KEGG) and were further annotated by information from other public resources in the knowledge base section, such as RaftProt and PubChem. DBLiPro offers a step-by-step interactive analysis workflow for lipidomics, transcriptomics, proteomics, and their integrating multi-omics analysis focusing on the human lipid metabolism. In summary, DBLiPro is capable of helping users discover key molecules (lipids and proteins) in human lipid metabolism and investigate lipid-protein functions underlying mechanisms based on their own omics data. The DBLiPro is freely available at http://lipid.cloudna.cn/home.