揭示丹参素钠对宫颈癌的多靶点效力:基于多靶点对接、结构指纹图谱和分子动力学模拟的研究。

IF 2.7 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Biomolecular Structure & Dynamics Pub Date : 2024-10-01 Epub Date: 2023-08-20 DOI:10.1080/07391102.2023.2248260
Saad Alghamdi, Hanadi M Baeissa, Mohammad Azhar Kamal, Misbahuddin M Rafeeq, Abdullah Al Zahrani, Ali Ahmed Maslum, Israa J Hakeem, Reem S Alazragi, Qamre Alam
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引用次数: 0

摘要

宫颈癌(CC)是全球妇女最常见的癌症类型之一,每年都有大量妇女死亡。尽管有多种治疗方案,但与宫颈癌相关的高死亡率凸显了开发新型有效治疗药物的必要性。在这项研究中,我们利用 HTVS、SP 和 XP 三种基于滑行的分子对接算法,针对有丝分裂驱动蛋白样蛋白 1、细胞周期蛋白 B1、DNA 聚合酶和 MCM10-ID 筛选了完整的 FDA 文库,得出了可靠的计算结果。这四种蛋白都是积极参与CC发育的关键蛋白,同时抑制这四种蛋白可以改变多靶点药物的设计。我们的多靶点筛选确定了丹参素钠(Na),这是一种从丹参中分离出来的天然酚类化合物,含有咖啡酸衍生物,已获美国食品药物管理局批准。对接得分范围为 -5.892 至 -13.103 Kcal/mol,筛选研究结合药代动力学和相互作用指纹图谱进行了评估,以确定相互作用模式,发现该化合物已结合到其所能配合的最佳位点上,在该位点上产生的最大键使复合物稳定。然后将分子动力学模拟时间延长 100 毫微秒,以验证蛋白质配体复合物的稳定性。结果为再利用提供了见解,Na-danshensu与靶蛋白表现出很强的结合亲和力并形成稳定的复合物,这表明它具有作为抗CC多靶点药物的潜力。
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Unveiling the multitargeted potency of Sodium Danshensu against cervical cancer: a multitargeted docking-based, structural fingerprinting and molecular dynamics simulation study.

Cervical Cancer (CC) is one of the most common types of cancer in women worldwide, with a significant number of deaths reported yearly. Despite the various treatment options available, the high mortality rate associated with CC highlights the need to develop new and effective therapeutic agents. In this study, we have screened the complete prepared FDA library against the Mitotic kinesin-like protein 1, Cyclin B1, DNA polymerase, and MCM10-ID using three glide-based molecular docking algorithms: HTVS, SP and XP to produce a robust calculation. All four proteins are crucial proteins that actively participate in CC development, and inhibiting them together can be a game-changer step for multitargeted drug designing. Our multitargeted screening identified Sodium (Na) Danshensu, a natural FDA-approved phenolic compound of caffeic acid derivatives isolated from Salvia miltiorrhiza. The docking score ranges from -5.892 to -13.103 Kcal/mol, and the screening study was evaluated with the pharmacokinetics and interaction fingerprinting to identify the pattern of interactions that revealed that the compound has bound to the best site it can be fitted to where maximum bonds were created to make the complex stable. The molecular dynamics simulations for 100 ns were then extended to validate the stability of the protein-ligand complexes. The results provide insight into the repurposing, and Na-danshensu exhibited strong binding affinity and stable complex formation with the target proteins, indicating its potential as a multitargeted drug against CC.Communicated by Ramaswamy H. Sarma.

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来源期刊
Journal of Biomolecular Structure & Dynamics
Journal of Biomolecular Structure & Dynamics 生物-生化与分子生物学
CiteScore
8.90
自引率
9.10%
发文量
597
审稿时长
2 months
期刊介绍: The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.
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