通过位点定向诱变提高单体醇脱氢酶的活性,用于位点特异性应用。

IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Protein Engineering Design & Selection Pub Date : 2023-01-21 DOI:10.1093/protein/gzad006
Arabella Essert, Kathrin Castiglione
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引用次数: 0

摘要

基因融合或共固定是通过调节催化特性、稳定性和适用性来优化酶催化级联反应的关键工具。通过位点特异性应用实现生物催化剂之间确定的空间组织是复杂的低聚酶的参与。由于四元结构的干扰和化学计量控制的困难,会导致活性损失。因此,这种应用需要一个活性和健壮的单体酶工具包。在这项研究中,我们设计了一个罕见的单体醇脱氢酶的例子,通过位点定向诱变来改善催化特性。来自超嗜热古细菌柯达菌热球菌的酶天然表现出高热稳定性和广泛的底物光谱,但在中等温度下仅具有低活性。最佳的酶变体在保持对映选择性和良好的热力学稳定性的同时,表现出了约5倍(2-庚醇)和9倍(3-庚醇)的活性提高。这些变异体在区域选择性、pH依赖性和NaCl活化方面也表现出改进的动力学特性。
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Enhancing the activity of a monomeric alcohol dehydrogenase for site-specific applications by site-directed mutagenesis.
Gene fusion or co-immobilization are key tools to optimize enzymatic reaction cascades by modulating catalytic features, stability and applicability. Achieving a defined spatial organization between biocatalysts by site-specific applications is complicated by the involvement of oligomeric enzymes. It can lead to activity losses due to disturbances of the quaternary structures and difficulties in stoichiometric control. Thus, a toolkit of active and robust monomeric enzymes is desirable for such applications. In this study, we engineered one of the rare examples of monomeric alcohol dehydrogenases for improved catalytic characteristics by site-directed mutagenesis. The enzyme from the hyperthermophilic archaeon Thermococcus kodakarensis naturally exhibits high thermostability and a broad substrate spectrum, but only low activity at moderate temperatures. The best enzyme variants showed an approximately 5-fold (2-heptanol) and 9-fold (3-heptanol) higher activity while preserving enantioselectivity and good thermodynamic stability. These variants also exhibited modified kinetic characteristics regarding regioselectivity, pH dependence and activation by NaCl.
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来源期刊
Protein Engineering Design & Selection
Protein Engineering Design & Selection 生物-生化与分子生物学
CiteScore
3.30
自引率
4.20%
发文量
14
审稿时长
6-12 weeks
期刊介绍: Protein Engineering, Design and Selection (PEDS) publishes high-quality research papers and review articles relevant to the engineering, design and selection of proteins for use in biotechnology and therapy, and for understanding the fundamental link between protein sequence, structure, dynamics, function, and evolution.
期刊最新文献
TIMED-Design: flexible and accessible protein sequence design with convolutional neural networks. Correction to: De novo design of a polycarbonate hydrolase. Interactive computational and experimental approaches improve the sensitivity of periplasmic binding protein-based nicotine biosensors for measurements in biofluids. Design of functional intrinsically disordered proteins. The shortest path method (SPM) webserver for computational enzyme design.
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