通过三维-QSAR、分子对接、分子动力学模拟和 ADME-Tox 计算预测 3,5-Diaryl-1H-Pyrazole 和 spiropyrazolines 衍生物作为治疗老年痴呆症的潜在乙酰胆碱酯酶抑制剂。

IF 2.7 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Biomolecular Structure & Dynamics Pub Date : 2024-11-01 Epub Date: 2023-09-01 DOI:10.1080/07391102.2023.2252116
Moulay Ahfid El Alaouy, Marwa Alaqarbeh, Mohamed Ouabane, Hanane Zaki, Mohamed ElBouhi, Hassan Badaoui, Youness Moukhliss, Abdelouahid Sbai, Hamid Maghat, Tahar Lakhlifi, Mohammed Bouachrine
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引用次数: 0

摘要

通过比较分子场分析(CoMFA)和分子相似性指数分析(CoMSIA)模型,利用定量三维结构-活性关系(3D-QSAR)验证了合成的 40 种 3,5-二芳基-1H-吡唑和螺吡唑啉衍生物变体作为乙酰胆碱酯酶抑制剂的功效。在这项研究中,不同的现场模型证明,与几种模型相比,CoMSIA/SE 模型是预测能力较高的最佳模型(Qved2 = O.65;R2 = 0.980;R2test = 0.727)。此外,CoMSIA/SE 模型生成的等高线图也证明了活性的关键结构需求。因此,产生了六个新化合物。在这些化合物中,M4 和 M5 的活性最高,但仍具有毒性,且吸收能力较差。而 M1、M2、M3 和 M6 在尊重 ADMET 特性的同时,仍然具有很高的活性。分子对接结果显示,化合物 M2 与乙酰胆碱酯酶的相互作用优于化合物 22。它们与残基 TYR:124、TYR:72 和 SER:293 之间的相互作用是经典的氢键作用,这些残基在乙酰胆碱酯酶抑制剂的生物活性中起着关键作用。MD 结果证实了对接结果,并表明与化合物 22(ΔGbinding = -133.375 KJ/mol)相比,化合物 M2 在 AChE 受体活性位点的稳定性令人满意(ΔGbinding = -151.225 KJ/mol)。此外,这两种化合物在 RMSD、Rg 和 RMSF 方面都具有良好的稳定性。上述结果表明,与化合物 22 相比,新设计的化合物 M2 在 AChE 受体的活性位点上更具活性。
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Computational Prediction of 3,5-Diaryl-1H-Pyrazole and spiropyrazolines derivatives as potential acetylcholinesterase inhibitors for alzheimer disease treatment by 3D-QSAR, molecular docking, molecular dynamics simulation, and ADME-Tox.

The efficacy of 40 synthesized variants of 3,5-diaryl-1H-pyrazole and spiropyrazoline' derivatives as acetylcholinesterase inhibitors is verified using a quantitative three-dimensional structure-activity relationship (3D-QSAR) by comparative molecular field analysis (CoMFA) and molecular similarity index analysis (CoMSIA) models. In this research, different field models proved that CoMSIA/SE model is the best model with high predictive power compared to several models (Qved2 = O.65; R2 = 0.980; R2test = 0.727). Also, contour maps produced by CoMSIA/SE model have been employed to prove the key structural needs of the activity. Consequently, six new compounds have been generated. Among these compounds, M4 and M5 were the most active but remained toxic and had poor absorption capacities. While the M1, M2, M3 and M6 remained highly active while respecting ADMET's characteristics. Molecular docking results showed compound M2 better with acetylcholinesterase than compound 22. The interactions are classical hydrogen bonding with residues TYR:124, TYR:72, and SER:293, which play a critical role in the biological activity as AChE inhibitors. MD results confirmed the docking results and showed that compound M2 had satisfactory stability with (ΔGbinding = -151.225 KJ/mol) in the active site of AChE receptor compared with compound 22 (ΔGbinding = -133.375 KJ/mol). In addition, both compounds had good stability regarding RMSD, Rg, and RMSF. The previous results show that the newly designed compound M2 is more active in the active site of AChE receptor than compound 22.Communicated by Ramaswamy H. Sarma.

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来源期刊
Journal of Biomolecular Structure & Dynamics
Journal of Biomolecular Structure & Dynamics 生物-生化与分子生物学
CiteScore
8.90
自引率
9.10%
发文量
597
审稿时长
2 months
期刊介绍: The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.
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