结合代谢组学和串联机器学习模型的伤口年龄估计:一种新的分析策略。

IF 1.4 4区 医学 Q3 MEDICINE, LEGAL Forensic Sciences Research Pub Date : 2023-03-01 DOI:10.1093/fsr/owad007
Jie Cao, Guoshuai An, Jian Li, Liangliang Wang, Kang Ren, Qiuxiang Du, Keming Yun, Yingyuan Wang, Junhong Sun
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摘要

伤口年龄估计是法医病理学家面临的最具挑战性和不可缺少的问题之一。虽然许多基于物理结果和生化试验的方法可用于估计伤口年龄,但客观可靠的方法来推断损伤后的时间间隔仍然很困难。在本研究中,研究了挫伤骨骼肌的内源性代谢产物,以估计损伤后的时间间隔。采用Sprague-Dawley大鼠建立骨骼肌损伤动物模型,于挫伤后4、8、12、16、20、24、28、32、36、40、44、48 h取损伤肌肉标本(n = 9)。然后,采用超高效液相色谱-高分辨率质谱法对样品进行分析。用代谢组学方法测定了43种不同代谢物。应用它们构建了基于多层感知器算法的两级串联预测模型。结果,所有肌肉样本最终被划分为4、8、12、16-20、24-32、36-40和44-48 h亚组。串联模型表现出鲁棒性,预测精度达到92.6%,远高于单一模型。综上所述,基于代谢组学数据的多层感知器-多层感知器串联机器学习模型可作为未来法医案件中伤口年龄估计的新策略。重点:骨骼肌损伤后代谢物谱变化与损伤时间间隔有关。采用高效液相色谱联用高分辨率质谱法筛选43种内源性代谢物,可区分伤口年龄。多层感知器(MLP)算法在使用代谢物估计伤口年龄方面表现出稳健的性能。将代谢组学与MLP-MLP串联模型相结合,可以提高损伤后时间间隔推断的准确性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Combined metabolomics and tandem machine-learning models for wound age estimation: a novel analytical strategy.

Wound age estimation is one of the most challenging and indispensable issues for forensic pathologists. Although many methods based on physical findings and biochemical tests can be used to estimate wound age, an objective and reliable method for inferring the time interval after injury remains difficult. In the present study, endogenous metabolites of contused skeletal muscle were investigated to estimate the time interval after injury. Animal model of skeletal muscle injury was established using Sprague-Dawley rat, and the contused muscles were sampled at 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44, and 48 h postcontusion (n = 9). Then, the samples were analysed using ultraperformance liquid chromatography coupled with high-resolution mass spectrometry. A total of 43 differential metabolites in contused muscle were determined by metabolomics method. They were applied to construct a two-level tandem prediction model for wound age estimation based on multilayer perceptron algorithm. As a result, all muscle samples were eventually divided into the following subgroups: 4, 8, 12, 16-20, 24-32, 36-40, and 44-48 h. The tandem model exhibited a robust performance and achieved a prediction accuracy of 92.6%, which was much higher than that of the single model. In summary, the multilayer perceptron-multilayer perceptron tandem machine-learning model based on metabolomics data can be used as a novel strategy for wound age estimation in future forensic casework.

Key points: The changes of metabolite profile were correlated with the time interval after injury in contused skeletal muscle.A panel of 43 endogenous metabolites screened by ultraperformance liquid chromatography coupled with high-resolution mass spectrometry could distinguish the wound ages.The multilayer perceptron (MLP) algorithm exhibited a robust performance in wound age estimation using metabolites.The combination of matabolomics and MLP-MLP tandem model could improve the accuracy of inferring the time interval after injury.

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来源期刊
Forensic Sciences Research
Forensic Sciences Research MEDICINE, LEGAL-
CiteScore
3.60
自引率
7.70%
发文量
158
审稿时长
26 weeks
期刊最新文献
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