真菌解多糖单加氧酶对纤维素表面氧化的功能表征

IF 6.1 1区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Biotechnology for Biofuels Pub Date : 2023-09-07 DOI:10.1186/s13068-023-02383-3
Yann Mathieu, Olanrewaju Raji, Annie Bellemare, Marcos Di Falco, Thi Truc Minh Nguyen, Alexander Holm Viborg, Adrian Tsang, Emma Master, Harry Brumer
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引用次数: 0

摘要

微生物裂解多糖单加氧酶(LPMOs)通过糖链C1或C4的初始氧化裂解多种生物质多糖,包括纤维素和半纤维素。在碳水化合物活性酶(CAZy)分类中,辅助活性家族9 (AA9)包括第一个也是最大的真菌LPMOs群,它们通常也与非催化性碳水化合物结合模块(CBMs)串联存在。LPMOs最初因其能够促进生物质完全解构为单糖而引起人们的关注。近年来,LPMOs已被应用于不溶性纤维素和甲壳素的选择性表面改性。结果为了进一步探索AA9 LPMOs的催化多样性,从公共数据库中提取了17000多个序列,进行筛选,构建了包含33个系统发育支持簇的序列相似网络(SSN)。其中,32个靶点在工业丝状真菌黑曲霉中成功产生,其中25个产生可检测的LPMO活性。对8个产量最高的靶标进行了详细的生化表征,揭示了纤维素表面氧化的单个C1、C4和混合C1/C4区域特异性、不同的氧化还原共底物偏好以及CBM靶向效应。具体来说,如羰基特异性荧光标记所示,CBM的存在与可溶性氧化产物的形成增加和更局部的表面氧化模式相关。另一方面,不含天然CBMs的LPMOs具有最小的可溶性产物释放和相对分散的氧化模式。本研究提供了对LPMOs结构和功能多样性的深入了解,并强调了进一步详细表征单个酶的需求,以确定最适合纤维素糖化和表面功能化的酶在生物材料中的应用。
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Functional characterization of fungal lytic polysaccharide monooxygenases for cellulose surface oxidation

Background

Microbial lytic polysaccharide monooxygenases (LPMOs) cleave diverse biomass polysaccharides, including cellulose and hemicelluloses, by initial oxidation at C1 or C4 of glycan chains. Within the Carbohydrate-Active Enzymes (CAZy) classification, Auxiliary Activity Family 9 (AA9) comprises the first and largest group of fungal LPMOs, which are often also found in tandem with non-catalytic carbohydrate-binding modules (CBMs). LPMOs originally attracted attention for their ability to potentiate complete biomass deconstruction to monosaccharides. More recently, LPMOs have been applied for selective surface modification of insoluble cellulose and chitin.

Results

To further explore the catalytic diversity of AA9 LPMOs, over 17,000 sequences were extracted from public databases, filtered, and used to construct a sequence similarity network (SSN) comprising 33 phylogenetically supported clusters. From these, 32 targets were produced successfully in the industrial filamentous fungus Aspergillus niger, 25 of which produced detectable LPMO activity. Detailed biochemical characterization of the eight most highly produced targets revealed individual C1, C4, and mixed C1/C4 regiospecificities of cellulose surface oxidation, different redox co-substrate preferences, and CBM targeting effects. Specifically, the presence of a CBM correlated with increased formation of soluble oxidized products and a more localized pattern of surface oxidation, as indicated by carbonyl-specific fluorescent labeling. On the other hand, LPMOs without native CBMs were associated with minimal release of soluble products and comparatively dispersed oxidation pattern.

Conclusions

This work provides insight into the structural and functional diversity of LPMOs, and highlights the need for further detailed characterization of individual enzymes to identify those best suited for cellulose saccharification versus surface functionalization toward biomaterials applications.

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来源期刊
Biotechnology for Biofuels
Biotechnology for Biofuels 工程技术-生物工程与应用微生物
自引率
0.00%
发文量
0
审稿时长
2.7 months
期刊介绍: Biotechnology for Biofuels is an open access peer-reviewed journal featuring high-quality studies describing technological and operational advances in the production of biofuels, chemicals and other bioproducts. The journal emphasizes understanding and advancing the application of biotechnology and synergistic operations to improve plants and biological conversion systems for the biological production of these products from biomass, intermediates derived from biomass, or CO2, as well as upstream or downstream operations that are integral to biological conversion of biomass. Biotechnology for Biofuels focuses on the following areas: • Development of terrestrial plant feedstocks • Development of algal feedstocks • Biomass pretreatment, fractionation and extraction for biological conversion • Enzyme engineering, production and analysis • Bacterial genetics, physiology and metabolic engineering • Fungal/yeast genetics, physiology and metabolic engineering • Fermentation, biocatalytic conversion and reaction dynamics • Biological production of chemicals and bioproducts from biomass • Anaerobic digestion, biohydrogen and bioelectricity • Bioprocess integration, techno-economic analysis, modelling and policy • Life cycle assessment and environmental impact analysis
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