[用miRNA转录组学分析镉诱导小鼠睾丸间充质细胞毒性的机制]。

Yajing Pian, Haolong Luo, Rui Lin, Li Zhou, Xiangmei Ren
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引用次数: 0

摘要

目的:利用转录组测序和生物信息学技术分析镉对小鼠睾丸间充质细胞(TM3)的细胞毒性作用机制。方法:选择TM3细胞作为细胞模型,分为对照组(未镉处理)和镉处理组(20 μmol/L CdCl_2)。给药24小时后,收获细胞提取总RNA, RNA质量检测后通过测序程序获得miRNA表达谱。以fold change(FC) >2, P<0.05作为标准筛选差异表达的mirna。采用实时定量聚合酶链反应(qRT-PCR)对差异表达的miRNAs进行验证。然后利用miRanda软件预测其靶基因,构建mirna -靶基因互作网络,并通过基因本体(GO)和京都基因基因组百科全书(KEGG)途径功能对其靶基因进行富集。结果:共鉴定出26个可能与镉诱导的TM3细胞毒性有关的差异表达mirna,其中上调19个,下调7个。qRT-PCR结果与miRNA测序结果一致。同时,生物信息学分析结果显示,这26个差异表达的mirna预测了657个靶基因。氧化石墨烯富集主要分为生物调控、代谢过程、蛋白质结合和催化活性。KEGG通路分析显示靶基因显著参与与炎症反应和细胞凋亡密切相关的丝裂原活化蛋白激酶(MAPK)和肿瘤坏死因子(TNF)信号通路。结论:镉可导致TM3细胞中mirna的差异表达,其靶基因可能通过MAPK、TNF等信号通路参与cd诱导的TM3细胞毒性。
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[Analysis the mechanism of cadmium-induced cytotoxicity in mouse testicular mesenchymal cells with miRNA transcriptomic].

Objective: To analyze the mechanism of cadmium-induced cytotoxicity in mouse testicular mesenchymal cells(TM3) with transcriptome sequencing and bioinformatics techniques.

Methods: TM3 cells were selected as the cell model and divided into control group(no cadmium treatment) and cadmium-treated group(20 μmol/L CdCl_2). After 24 hours of administration, cells were harvested to extract total RNA, and then miRNA expression profiles were obtained by sequencing program after RNA quality detection. The fold change(FC) >2, P<0.05 was used as the standard to screen for differentially expressed miRNAs. The quantitative real-time polymerase chain reaction(qRT-PCR) was used to verify the differentially expressed miRNAs. Then, their target genes were predicted by miRanda software to construct miRNA-target gene interaction network, and their target genes were enriched by gene ontology(GO) and Kyoto encyclopedia of genes and genomes(KEGG) pathway function.

Results: A total of 26 differentially expressed miRNAs were identified which may be related to cadmium-induced TM3 cytotoxicity, including 19 up-regulated and 7 down-regulated miRNAs. The result of qRT-PCR were consistent with the miRNA sequencing result. Meanwhile, bioinformatics analysis result showed that the 26 differentially expressed miRNAs predicted 657 target genes. GO enrichment was mainly classified into biological regulation, metabolic process, protein binding and catalytic activity. KEGG pathway analysis showed that target genes were significantly involved in mitogen-activated protein kinase(MAPK) and tumor necrosis factor(TNF) signal pathways closely related to inflammatory response and apoptosis.

Conclusion: Cadmium can lead to the differential expression of miRNAs in TM3 cells, and its target genes may be involved in Cd-induced TM3 cytotoxicity through signaling pathways such as MAPK and TNF.

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