埃瓦尔德球/焦点梯度不限制低温电镜重建的分辨率

IF 3.5 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Structural Biology: X Pub Date : 2023-01-01 DOI:10.1016/j.yjsbx.2022.100083
J. Bernard Heymann
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引用次数: 1

摘要

为了在低温电镜下以更高的分辨率解决生物分子结构问题,我们必须注意处理电子显微镜下图像形成的各个方面。其中之一是埃瓦尔德球/焦点梯度,它源于显微镜中的散射几何及其对恢复高分辨率和手性信息的含义。虽然已经提出并实施了几种处理方法,但正确的方法仍然存在问题。在低温电子显微镜使用的高加速电压下,忽略埃瓦尔德球的传统投影近似在2-3 Å附近和大颗粒处破裂。对于大多数生物学上有趣的分子来说,这可能不是至关重要的,但对于了解催化事件、分子轨道、结合水分子的取向等细节是必需的。通过仿真,我发现在重构过程中沿埃瓦尔德球在频率空间上的积分,“简单插入法”足以达到奈奎斯特频率的分辨率。理论和仿真都表明,在这些阶段编码的手性信息在真实空间图像的形成过程中不可挽回地丢失了。结论是沿着埃瓦尔德球的正确重建避免了投影近似的局限性。
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The Ewald sphere/focus gradient does not limit the resolution of cryoEM reconstructions

In our quest to solve biomolecular structures to higher resolutions in cryoEM, care must be taken to deal with all aspects of image formation in the electron microscope. One of these is the Ewald sphere/focus gradient that derives from the scattering geometry in the microscope and its implications for recovering high resolution and handedness information. While several methods to deal with it has been proposed and implemented, there are still questions as to the correct approach. At the high acceleration voltages used for cryoEM, the traditional projection approximation that ignores the Ewald sphere breaks down around 2–3 Å and with large particles. This is likely not crucial for most biologically interesting molecules, but is required to understand detail about catalytic events, molecular orbitals, orientation of bound water molecules, etc. Through simulation I show that integration along the Ewald spheres in frequency space during reconstruction, the “simple insertion method” is adequate to reach resolutions to the Nyquist frequency. Both theory and simulations indicate that the handedness information encoded in such phases is irretrievably lost in the formation of real space images. The conclusion is that correct reconstruction along the Ewald spheres avoids the limitations of the projection approximation.

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来源期刊
Journal of Structural Biology: X
Journal of Structural Biology: X Biochemistry, Genetics and Molecular Biology-Structural Biology
CiteScore
6.50
自引率
0.00%
发文量
20
审稿时长
62 days
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