[肺腺癌预后代谢相关基因的生物信息学分析]。

Wenting Zhang, Yafeng Liu, Chunxiao Hu, Xueqin Wang, Jun Xie, Xue Zhang, Wanfa Hu, Jing Wu, Yingru Xing, Dong Hu
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引用次数: 0

摘要

目的建立并验证基于代谢基因生物信息学的肺腺癌预后模型。方法从美国癌症基因组图谱(Cancer Genome Atlas, TCGA)数据库和基因表达图谱(gene expression omnibus, GEO)中获取肺腺癌相关数据,采用LASSO回归构建多基因预后模型并计算风险评分(risk-score, RS)。进行单因素和多因素Cox独立预后分析。采用ROC曲线评价模型的受试者工作特征曲线下面积(AUC),并进行生存分析。构建Nomogram来评估模型的可行性,并通过GSEA进行代谢基因功能富集分析。利用肿瘤免疫估计资源(Tumor immune estimation resource, TIMER)数据库分析患者RS与免疫细胞浸润及免疫检查点分子表达的相关性。结果利用TCGA数据库构建了基于18个代谢相关基因的肺腺癌预后模型,RS作为独立预后因素。ROC曲线下面积为0.713。生存分析显示,低危组总生存率高于高危组,预后模型与免疫细胞浸润和免疫检查点分子表达有关。结论RS在肺腺癌代谢基因预后模型中是一个独立的预后因素,提示该模型具有较高的预后价值。
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[Bioinformatic analysis of prognostic metabolism-related genes in lung adenocarcinoma].

Objective To construct and validate a prognostic model for lung adenocarcinoma based on bioinformatics of metabolic genes. Methods Lung adenocarcinoma-related data from The Cancer Genome Atlas (TCGA) database and gene expression omnibus (GEO) were acquired, and LASSO regression was used to construct multi-gene prognostic models and calculate risk-score (RS). Univariate and multivariate Cox independent prognostic analysis was performed. The area under receiver operating characteristic (ROC) curve (AUC) of the model was evaluated by ROC curve and survival analysis was performed. Nomogram were constructed to evaluate the feasibility of the model, and metabolic gene functional enrichment analysis was performed by GSEA. Tumor immune estimation resource (TIMER) database was used to analyze the correlation of patients RS with immune cell infiltration and with the expression of immune checkpoint molecules. Results The TCGA database was used to construct a prognostic model for lung adenocarcinoma based on 18 metabolism-related genes, and RS was used as an independent prognostic factor. The area under the ROC curve was 0.713. Survival analysis showed that overall survival was higher in the low-risk group compared to the high-risk group, and the prognostic model was associated with infiltration of immune cells and with the expression of immune checkpoint molecules. Conclusion RS is an independent prognostic factor in the prognostic model of lung adenocarcinoma with metabolic genes, suggesting a high prognostic value of this model.

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