在具有极端统计的T细胞激活的动力学校对模型中,通过免疫接触的持续时间来调节抗原辨别。

IF 4.3 2区 生物学 PLoS Computational Biology Pub Date : 2023-08-30 eCollection Date: 2023-08-01 DOI:10.1371/journal.pcbi.1011216
Jonathan Morgan, Alan E Lindsay
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引用次数: 0

摘要

T细胞与抗原呈递细胞(APC)形成短暂的细胞间接触,以促进膜结合T细胞受体(TCRs)的表面询问。在识别病原体的分子特征(抗原)后,T细胞可以启动适应性免疫反应。观察到T细胞/APC接触的持续时间变化很大,但尚不清楚这种变化在免疫信号传导中可能发挥什么建设性作用(如果有的话)。描述抗原辨别的建模工作通常侧重于稳态近似,而没有考虑细胞接触的瞬态性质。在动力学校对(KP)机制的框架内,我们开发了一个随机第一受体激活模型(FRAM),描述了在接触期满前产生生产性免疫信号的可能性。通过使用极端统计学,我们表征了第一次TCR触发是由罕见的激动剂抗原而不是由丰富的自身抗原诱导的概率。我们表明,将阳性免疫结果定义为对极端统计数据的弹性和对罕见事件的敏感性,可以缓解与KP相关的经典权衡。通过选择足够数量的KP步骤,我们的模型能够产生单一激动剂敏感性,同时对大量自身抗原保持无反应,即使当自身和激动剂抗原在解离速率上与TCR相似但在表达上大不相同时。此外,即使激动剂阳性APC很少遇到,我们的模型也能达到高水平的准确性。最后,我们讨论了与高分类精度相关的潜在生物成本,特别是在具有挑战性的T细胞环境中。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Modulation of antigen discrimination by duration of immune contacts in a kinetic proofreading model of T cell activation with extreme statistics.

T cells form transient cell-to-cell contacts with antigen presenting cells (APCs) to facilitate surface interrogation by membrane bound T cell receptors (TCRs). Upon recognition of molecular signatures (antigen) of pathogen, T cells may initiate an adaptive immune response. The duration of the T cell/APC contact is observed to vary widely, yet it is unclear what constructive role, if any, such variations might play in immune signaling. Modeling efforts describing antigen discrimination often focus on steady-state approximations and do not account for the transient nature of cellular contacts. Within the framework of a kinetic proofreading (KP) mechanism, we develop a stochastic First Receptor Activation Model (FRAM) describing the likelihood that a productive immune signal is produced before the expiry of the contact. Through the use of extreme statistics, we characterize the probability that the first TCR triggering is induced by a rare agonist antigen and not by that of an abundant self-antigen. We show that defining positive immune outcomes as resilience to extreme statistics and sensitivity to rare events mitigates classic tradeoffs associated with KP. By choosing a sufficient number of KP steps, our model is able to yield single agonist sensitivity whilst remaining non-reactive to large populations of self antigen, even when self and agonist antigen are similar in dissociation rate to the TCR but differ largely in expression. Additionally, our model achieves high levels of accuracy even when agonist positive APCs encounters are rare. Finally, we discuss potential biological costs associated with high classification accuracy, particularly in challenging T cell environments.

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PLoS Computational Biology
PLoS Computational Biology 生物-生化研究方法
CiteScore
7.10
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4.70%
发文量
820
期刊介绍: PLOS Computational Biology features works of exceptional significance that further our understanding of living systems at all scales—from molecules and cells, to patient populations and ecosystems—through the application of computational methods. Readers include life and computational scientists, who can take the important findings presented here to the next level of discovery. Research articles must be declared as belonging to a relevant section. More information about the sections can be found in the submission guidelines. Research articles should model aspects of biological systems, demonstrate both methodological and scientific novelty, and provide profound new biological insights. Generally, reliability and significance of biological discovery through computation should be validated and enriched by experimental studies. Inclusion of experimental validation is not required for publication, but should be referenced where possible. Inclusion of experimental validation of a modest biological discovery through computation does not render a manuscript suitable for PLOS Computational Biology. Research articles specifically designated as Methods papers should describe outstanding methods of exceptional importance that have been shown, or have the promise to provide new biological insights. The method must already be widely adopted, or have the promise of wide adoption by a broad community of users. Enhancements to existing published methods will only be considered if those enhancements bring exceptional new capabilities.
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