将蛋白质晶体结构与配体结合热力学联系起来。

IF 1.1 4区 生物学 Q4 BIOCHEMICAL RESEARCH METHODS Acta crystallographica. Section F, Structural biology communications Pub Date : 2022-12-01 DOI:10.1107/S2053230X22011244
John R Helliwell
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引用次数: 0

摘要

生物物理化学和生物晶体结构之间的一个重要接口涉及到是否有可能将蛋白质配体结合的实验量热测量与3D结构联系起来。事实证明,这是具有挑战性的。探测物质结构的探测器,即x射线、中子和电子,在它们的使用中有这样或那样的挑战。本文以糖与凝集素的结合为主题,然而在25年左右的时间里,将3D结构与结合能联系起来仍然是一项正在进行的工作。虽然这项研究涉及一种蛋白质(凝集素)和一类配体(单糖),即它是特异性的,但它具有普遍重要性,例如通过其广泛的影响来衡量。作为一篇科学评论,我现在写这篇更新的动力是,在糖结合凝集素的中子晶体结构测定方面取得了突破。本文认为中子蛋白晶体学的新研究可以改善,即减少估计结合能的误差。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Relating protein crystal structure to ligand-binding thermodynamics.

An important interface between biophysical chemistry and biological crystal structures involves whether it is possible to relate experimental calorimetry measurements of protein ligand binding to 3D structures. This has proved to be challenging. The probes of the structure of matter, namely X-rays, neutrons and electrons, have challenges of one type or another in their use. This article focuses on saccharide binding to lectins as a theme, yet after 25 years or so it is still a work in progress to connect 3D structure to binding energies. Whilst this study involved one type of protein (lectins) and one class of ligand (monosaccharides), i.e. it was specific, it was of general importance, as measured for instance by its wide impact. The impetus for writing this update now, as a Scientific Comment, is that a breakthrough in neutron crystal structure determinations of saccharide-bound lectins has been achieved. It is suggested here that this new research from neutron protein crystallography could improve, i.e. reduce, the errors in the estimated binding energies.

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来源期刊
Acta crystallographica. Section F, Structural biology communications
Acta crystallographica. Section F, Structural biology communications BIOCHEMICAL RESEARCH METHODSBIOCHEMISTRY &-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
1.90
自引率
0.00%
发文量
95
期刊介绍: Acta Crystallographica Section F is a rapid structural biology communications journal. Articles on any aspect of structural biology, including structures determined using high-throughput methods or from iterative studies such as those used in the pharmaceutical industry, are welcomed by the journal. The journal offers the option of open access, and all communications benefit from unlimited free use of colour illustrations and no page charges. Authors are encouraged to submit multimedia content for publication with their articles. Acta Cryst. F has a dedicated online tool called publBio that is designed to make the preparation and submission of articles easier for authors.
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