鲶鱼的有丝系统发育及其对鲶鱼科和银尾亚目的分类意义。

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2023-09-22 eCollection Date: 2023-01-01 DOI:10.6620/ZS.2023.62-48
Thuy Yen Duong, Linh Thi Khanh Pham, Xuyen Thi Kim Le, Ngoc Tran Thi Nguyen, Azizah Mohd Nor, Thanh Hoa Le
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引用次数: 0

摘要

鲶鱼科(鲶鱼目:志拉鱼目)包括鲶鱼目、鲶鱼目、鲶鱼目和鲶鱼目4属30种。由于新描述的物种的加入,它们的系统分类经常被修订。虽然已知Pangasiidae是一个单系科,但分类群之间的属系和系统发育关系尚未得到很好的解决。本研究对越南湄公河鲶鱼(Pangasius mekongensis、Pangasius krempfi和Pangasianodon hypophthalmus)三个新获得的完整有丝分裂基因组进行了特征分析,并对越南湄公河鲶鱼科和鲶鱼科的家族间和家族内关系进行了研究。它们的有丝分裂基因组的基因组特征与先前报道的鲶鱼相似,包括控制区的所有调控元件,扩展末端相关序列(ETAS)和保守序列块(csb) (CSB-1, CSB-2, CSB-3和csb, A至F)。通过对32个已知的siluriform科的117个完整有丝分裂基因组的多个13个PCG序列的数据集构建的综合系统发育,确定Pangasiidae是单系的,是austrroglanididae的姐妹类群。[Pangasiidae + austrroglaniddae] + (Ictaluridae + cranoglaniddae) + Ariidae]分支是Siluriformes“大非洲”主要分支的姐妹。此外,从单个条形码构建的两个系统发育(分别为83个部分cox1和80个部分cytB)清楚地表明Pangasiidae内的属关系。Pangasianodon属单系,是Pangasius + hagus + Pseudolais类群的姊妹类。在Pangasius属中,P. mekongensis被认为是P. Pangasius的姊妹分类单元。sanitwongsei Pangasius sanitwongsei与Pangasianodon有亲缘关系并归属于Pangasius + hagus + Pseudolais类群,但在单基因系统发育上属于Pangasius + hagus + Pseudolais类群。本研究的数据集对研究鲶鱼的系统学、分类学和进化具有重要意义。
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Mitophylogeny of Pangasiid Catfishes and its Taxonomic Implications for Pangasiidae and the Suborder Siluroidei.

Pangasiidae (catfish order: Siluriformes) comprises 30 valid catfish species in four genera: Pangasius, Pangasianodon, Helicophagus, and Pseudolais. Their systematics are frequently revised due to the addition of newly described species. Although Pangasiidae is known to be a monophyletic family, the generic and phylogenetic relationships among the taxa are poorly resolved. This study characterized three newly obtained complete mitogenomes of Mekong River catfishes from Vietnam (Pangasius mekongensis, Pangasius krempfi, and Pangasianodon hypophthalmus), as well as the inter-and intrafamilial relationships of the Pangasiidae and catfish families in Siluroidei. The genomic features of their mitogenomes were similar to those of previously reported pangasiids, including all regulatory elements, extended terminal associated sequences (ETAS), and conserved sequence blocks (CSBs) (CSB-1, CSB-2, CSB-3, and CSBs, A to F) in the control region. A comprehensive phylogeny constructed from datasets of multiple 13 PCG sequences from 117 complete mitogenomes of 32 recognized siluriform families established Pangasiidae as monophyletic and a sister group of Austroglanididae. The [Pangasiidae + Austroglanididae] + (Ictaluridae + Cranoglanididae) + Ariidae] clade is a sister to the "Big Africa" major clade of Siluriformes. Furthermore, both phylogenies constructed from the single barcodes (83 partial cox1 and 80 partial cytB, respectively) clearly indicate genus relationships within Pangasiidae. Pangasianodon was monophyletic and a sister to the (Pangasius + Helicophagus + Pseudolais) group. Within the genus Pangasius, P. mekongensis was placed as a sister taxon to P. pangasius. Pangasius sanitwongsei was found to be related to and grouped with Pangasianodon, but in single-gene phylogenies, it was assigned to the Pangasius + Helicophagus + Pseudolais group. The datasets in this study are useful for studying pangasiid systematics, taxonomy and evolution.

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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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