u - net:一种基于特征融合的混合结构网络,用于医学图像分割。

IF 4 3区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY Biodata Mining Pub Date : 2023-02-21 DOI:10.1186/s13040-023-00320-6
Yun Jiang, Jinkun Dong, Tongtong Cheng, Yuan Zhang, Xin Lin, Jing Liang
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引用次数: 0

摘要

近年来,卷积神经网络(cnn)在医学图像分割领域取得了很大的成就,尤其是基于u型结构和跳跃连接的全卷积神经网络。然而,受卷积固有局限性的限制,基于cnn的方法通常在建模远程依赖关系方面表现出局限性,并且无法提取大量的全局上下文信息,这剥夺了神经网络适应不同视觉模式的能力。在本文中,我们提出了我们自己的模型,称为u - net,因为它的结构非常类似于i和u的组合。u - net是一种结合了Swin Transformer和CNN的多重编码器-解码器结构。我们使用分层Swin Transformer结构,以移位窗口作为主编码器,卷积作为副编码器,以补充主编码器提取的上下文信息。为了充分融合从多个编码器中提取的特征信息,我们设计了一个基于波函数表示的特征融合模块(W-FFM)。此外,本文还提出了一种三支向上采样方法(Tri-Upsample)来代替Swin变压器中的补丁扩展,有效地避免了补丁扩展引起的棋盘伪影。在皮肤病变区域分割任务上,iU-Net的分割性能最优,Dice和Iou的分割性能分别达到90.12%和83.06%。为了验证iU-Net的泛化,我们使用在ISIC2018数据集上训练的模型在PH2数据集上进行测试,获得了93.80%的Dice和88.74%的IoU。在肺场分割任务上,iU-Net在IoU和Precision上取得了最优结果,分别达到98.54%和94.35%。大量的实验证明了iU-Net的分割性能和泛化能力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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iU-Net: a hybrid structured network with a novel feature fusion approach for medical image segmentation.

In recent years, convolutional neural networks (CNNs) have made great achievements in the field of medical image segmentation, especially full convolutional neural networks based on U-shaped structures and skip connections. However, limited by the inherent limitations of convolution, CNNs-based methods usually exhibit limitations in modeling long-range dependencies and are unable to extract large amounts of global contextual information, which deprives neural networks of the ability to adapt to different visual modalities. In this paper, we propose our own model, which is called iU-Net bacause its structure closely resembles the combination of i and U. iU-Net is a multiple encoder-decoder structure combining Swin Transformer and CNN. We use a hierarchical Swin Transformer structure with shifted windows as the primary encoder and convolution as the secondary encoder to complement the context information extracted by the primary encoder. To sufficiently fuse the feature information extracted from multiple encoders, we design a feature fusion module (W-FFM) based on wave function representation. Besides, a three branch up sampling method(Tri-Upsample) has developed to replace the patch expand in the Swin Transformer, which can effectively avoid the Checkerboard Artifacts caused by the patch expand. On the skin lesion region segmentation task, the segmentation performance of iU-Net is optimal, with Dice and Iou reaching 90.12% and 83.06%, respectively. To verify the generalization of iU-Net, we used the model trained on ISIC2018 dataset to test on PH2 dataset, and achieved 93.80% Dice and 88.74% IoU. On the lung feild segmentation task, the iU-Net achieved optimal results on IoU and Precision, reaching 98.54% and 94.35% respectively. Extensive experiments demonstrate the segmentation performance and generalization ability of iU-Net.

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来源期刊
Biodata Mining
Biodata Mining MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
7.90
自引率
0.00%
发文量
28
审稿时长
23 weeks
期刊介绍: BioData Mining is an open access, open peer-reviewed journal encompassing research on all aspects of data mining applied to high-dimensional biological and biomedical data, focusing on computational aspects of knowledge discovery from large-scale genetic, transcriptomic, genomic, proteomic, and metabolomic data. Topical areas include, but are not limited to: -Development, evaluation, and application of novel data mining and machine learning algorithms. -Adaptation, evaluation, and application of traditional data mining and machine learning algorithms. -Open-source software for the application of data mining and machine learning algorithms. -Design, development and integration of databases, software and web services for the storage, management, retrieval, and analysis of data from large scale studies. -Pre-processing, post-processing, modeling, and interpretation of data mining and machine learning results for biological interpretation and knowledge discovery.
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