肠杆菌噬菌体SV76宿主范围和基因组特征。

Caitlin M Carmody, Emma L Farquharson, Sam R Nugen
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摘要

背景:增加噬菌体基因组数据的数量和细节对于扩大我们对噬菌体如何运作的理解至关重要,从而使我们能够利用其独特的特性来促进生物技术的进步。在这里,我们展示了噬菌体SV76组装和注释的基因组的完整序列(Accession OM339528)。SV76以前被归类为t4样噬菌体,属于肌病毒科收缩尾噬菌体中的Tequatrovirus属。材料和方法:在SV76上进行全基因组测序、组装和注释。利用双琼脂斑点法确定SV76的宿主范围,对照一组72株大肠杆菌分离物,以代表大肠杆菌的多样性,以及一系列旨在识别所需受体结合蛋白的敲除。将其基因组和宿主范围与密切相关的噬菌体T2进行比较。结果:斑点试验显示,SV76能在72株菌株中的10株(13.9%)上形成斑块,9株大肠杆菌K12单基因敲除已知噬菌体受体中的9株(100%)上形成斑块。SV76不能在ΔfadL大肠杆菌上平板,这表明需要作为受体结合蛋白。结论:SV76与T2密切相关,ECOR内宿主范围相似。本研究提供了SV76噬菌体新的宿主范围和基因组数据,为进一步研究SV76提供了基础,为进一步了解SV76和其他可用于创造新的生物技术的t4样噬菌体提供了基础。
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Enterobacteria Phage SV76 Host Range and Genomic Characterization.

Background: Increasing the quantity and detail of bacteriophage genomic data is critical to broadening our understanding of how bacteriophages operate to allow us to harness their unique properties for biotechnology advancements. Here we present the complete sequence of phage SV76's assembled and annotated genome (Accession OM339528). SV76 has previously been classified as a T4-like bacteriophage belonging to the Tequatrovirus genus within the Myoviridae family of contractile tailed bacteriophages.

Materials and methods: Whole genome sequencing, assembly, and annotation was performed on SV76. Double-agar spot assays were utilized to determine SV76's host range against a panel of 72 Escherichia coli isolates meant to represent the diversity of E. coli, as well as a series of knockouts designed to identify required receptor binding proteins. The genome and host range were compared to the closely related phage, T2.

Results: Spot assays revealed that SV76 could plaque on 10 of the 72 strains (13.9 %) and nine of the nine E. coli K12 single gene knockout of known phage receptors (100%). SV76 did not plate on a ΔfadL E. coli indicating suggesting a requirement as a receptor binding protein.

Conclusions: SV76 is closely related to T2 with similar host ranges within ECOR. This study presents novel host range and genomic data on SV76 phage, providing a foundation for future studies to further characterize SV76 to understand more about SV76 and other T4-like phages that can be applied to create novel biotechnologies.

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