利用新一代测序技术破译Deulajhari温泉的结构群落

Archana Singh, Mahendra Gaur, E. Subudhi
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摘要

破译Deulajhari温泉的微生物多样性是我们研究的主要目标。本研究从位于奥里萨邦安圭尔地区的Deulajhari温泉的1.52 Gb元基因组序列中推断出细菌群落结构的分类描述。它被浓密的叶子覆盖,温度高,为69°C,碱性pH值为8.09。各种理化参数对沉积物样的分析;电导率(0.025dSm-1)、总有机碳含量(0.356%)、氮含量(125 kg/ha)、磷含量(7.88 kg/ha)和钾含量(169.34 kg/ha)。对Deulajhari温泉沉积物样品进行群落DNA扩增子宏基因组测序,进一步提取16S rRNA V3-V4区。在门水平上,变形杆菌门占总微生物多样性的88.12%,其次是拟杆菌门10.76%、厚壁菌门0.35%、螺旋体门0.18%、热菌门0.13%和绿菌门0.11%。因此,通过使用IIllumina平台对Deulajhari温泉进行宏基因组测序,我们代表了那里存在的完整的微生物群落结构,以及它们的分布,丰富度和共存微生物群的多样性。
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Deciphering the structural community from the Deulajhari hot spring using the next-generation sequencing
Deciphering the microbial diversity of the Deulajhari thermal springs is the major goal of our study. In our study the taxonomic description of the bacterial community structure was deduced from the 1.52 Gb metagenomics sequence size from the Deulajhari hot spring located in the Angul district of Odisha. Covered with the dense foliage, it has a high temperature, i.e. 69°C and alkaline pH i.e. 8.09. Various physiochemical parameter analysis of the sediment like; electro conductivity (0.025dSm-1), total organic carbon content (0.356%), nitrogen (125 kg/ha), phosphorus (7.88 kg/ha) and potassium (169.34 kg/ha) were done. Sediment sample of the Deulajhari hot spring was further processed for the 16S rRNA V3-V4 region by the amplicon metagenome sequencing from community DNA. Approximately 88.12% of the total microbial diversity was represented by the Proteobacteria followed by Bacteroidetes 10.76%, Firmicutes 0.35%, Spirochetes 0.18%, Thermi 0.13% and chloroflexi 0.11% at the phylum level. Thus through the metagenomics sequencing of the Deulajhari hot spring using IIllumina platform, we represent the complete microbial community structure present there in respective of their allocation, profusion and diverse coexisting microbiota.
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