{"title":"利用Lennard-Jones的潜力模型,分析了体温对人类白蛋白血清(HSA)体积的影响","authors":"Muhammad Rasyid Sidik, Yanti Yulianti, Dwi Asmi","doi":"10.23960/JTAF.V8I2.2434","DOIUrl":null,"url":null,"abstract":"Research on molecular dynamics analysis of the influence of body temperature on HSA fluid volume balance using the Lennard-Jones potential model with temperature variations of 35 ℃, 37 ℃, and 40 ℃ in the form of cubic systems in GROMACS applications. The results show that the denaturation of HSA that is affected by body temperature causes changes in osmotic pressure in the body with changes in the balance of HSA fluid volume. At temperatures of 35 ℃ denaturations occurs Thr566 to Gln580 with a distance of 20.9 A, Lys444 to Met446 with a distance of 5.76 A, Asn61 to Cys62 with a distance of 3.9 A, Glu570 to Ser579 with a distance of 18.09 A, and Gly431 to Cys438 with a distance of 11.43 A. At a temperature of 37 ℃ denaturations occurs Ile513 to Cys514 has a distance of 3.75 A, Pro303 to Glu311 has a distance of 12.78 A, Asn267 to Ser270 has a distance of 4.65 A, Leu275 to Cys279 has a distance of 7 A At a temperature of 40 ℃ denaturations occurs Ser304 to Glu311 with a distance of 11.38 A, Asn267 to Ile271 with a distance of 7.75 A, Asn61 to Cys62 with a distance of 3.9 A, and Ala511 to Cys514 with a distance of 4.86 A. RMSD results shows that stable structural changes occur in HSA with values of 2.6–9.0 nm. And the Lennard-Jones average energy yield shows that the interaction behavior between HSA atoms is dynamic. At a temperature of 35 ℃ of 7.97E + 05 kJ/mol, a temperature of 37 ℃ of 6.78 kJ/mol, and a temperature of 40 ℃ of 7.89E + 05 kJ/mol.","PeriodicalId":314761,"journal":{"name":"Jurnal Teori dan Aplikasi Fisika","volume":"61 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2020-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Analisis Dinamika Molekuler Pengaruh Suhu Tubuh Terhadap Keseimbangan Volume Human Serum Albumin (HSA) Menggunakan Model Potensial Lennard-Jones\",\"authors\":\"Muhammad Rasyid Sidik, Yanti Yulianti, Dwi Asmi\",\"doi\":\"10.23960/JTAF.V8I2.2434\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Research on molecular dynamics analysis of the influence of body temperature on HSA fluid volume balance using the Lennard-Jones potential model with temperature variations of 35 ℃, 37 ℃, and 40 ℃ in the form of cubic systems in GROMACS applications. The results show that the denaturation of HSA that is affected by body temperature causes changes in osmotic pressure in the body with changes in the balance of HSA fluid volume. At temperatures of 35 ℃ denaturations occurs Thr566 to Gln580 with a distance of 20.9 A, Lys444 to Met446 with a distance of 5.76 A, Asn61 to Cys62 with a distance of 3.9 A, Glu570 to Ser579 with a distance of 18.09 A, and Gly431 to Cys438 with a distance of 11.43 A. At a temperature of 37 ℃ denaturations occurs Ile513 to Cys514 has a distance of 3.75 A, Pro303 to Glu311 has a distance of 12.78 A, Asn267 to Ser270 has a distance of 4.65 A, Leu275 to Cys279 has a distance of 7 A At a temperature of 40 ℃ denaturations occurs Ser304 to Glu311 with a distance of 11.38 A, Asn267 to Ile271 with a distance of 7.75 A, Asn61 to Cys62 with a distance of 3.9 A, and Ala511 to Cys514 with a distance of 4.86 A. RMSD results shows that stable structural changes occur in HSA with values of 2.6–9.0 nm. And the Lennard-Jones average energy yield shows that the interaction behavior between HSA atoms is dynamic. At a temperature of 35 ℃ of 7.97E + 05 kJ/mol, a temperature of 37 ℃ of 6.78 kJ/mol, and a temperature of 40 ℃ of 7.89E + 05 kJ/mol.\",\"PeriodicalId\":314761,\"journal\":{\"name\":\"Jurnal Teori dan Aplikasi Fisika\",\"volume\":\"61 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2020-07-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Jurnal Teori dan Aplikasi Fisika\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.23960/JTAF.V8I2.2434\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Jurnal Teori dan Aplikasi Fisika","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.23960/JTAF.V8I2.2434","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
在GROMACS应用中,采用Lennard-Jones势模型,在35℃、37℃和40℃条件下,以立方系统的形式分析体温对HSA体液体积平衡影响的分子动力学研究结果表明,受体温影响的HSA变性会引起体内渗透压的变化,从而改变HSA液量的平衡。在35℃温度下,Thr566到Gln580的变性距离为20.9 a, Lys444到Met446的变性距离为5.76 a, Asn61到Cys62的变性距离为3.9 a, Glu570到Ser579的变性距离为18.09 a, Gly431到Cys438的变性距离为11.43 a。的温度37℃变性发生Ile513 Cys514 3.75的距离,Pro303 Glu311 12.78的距离,Asn267 Ser270 4.65的距离,Leu275 Cys279距离为7的温度40℃变性发生Ser304 Glu311距离为11.38,Asn267 Ile271 7.75的距离,Asn61 Cys62 3.9的距离,和Ala511 Cys514距离为4.86 a。RMSD结果表明,HSA在2.6 ~ 9.0 nm范围内发生了稳定的结构变化。Lennard-Jones平均产能表明,HSA原子之间的相互作用是动态的。温度为35℃时为7.97E + 05 kJ/mol,温度为37℃时为6.78 kJ/mol,温度为40℃时为7.89E + 05 kJ/mol。
Analisis Dinamika Molekuler Pengaruh Suhu Tubuh Terhadap Keseimbangan Volume Human Serum Albumin (HSA) Menggunakan Model Potensial Lennard-Jones
Research on molecular dynamics analysis of the influence of body temperature on HSA fluid volume balance using the Lennard-Jones potential model with temperature variations of 35 ℃, 37 ℃, and 40 ℃ in the form of cubic systems in GROMACS applications. The results show that the denaturation of HSA that is affected by body temperature causes changes in osmotic pressure in the body with changes in the balance of HSA fluid volume. At temperatures of 35 ℃ denaturations occurs Thr566 to Gln580 with a distance of 20.9 A, Lys444 to Met446 with a distance of 5.76 A, Asn61 to Cys62 with a distance of 3.9 A, Glu570 to Ser579 with a distance of 18.09 A, and Gly431 to Cys438 with a distance of 11.43 A. At a temperature of 37 ℃ denaturations occurs Ile513 to Cys514 has a distance of 3.75 A, Pro303 to Glu311 has a distance of 12.78 A, Asn267 to Ser270 has a distance of 4.65 A, Leu275 to Cys279 has a distance of 7 A At a temperature of 40 ℃ denaturations occurs Ser304 to Glu311 with a distance of 11.38 A, Asn267 to Ile271 with a distance of 7.75 A, Asn61 to Cys62 with a distance of 3.9 A, and Ala511 to Cys514 with a distance of 4.86 A. RMSD results shows that stable structural changes occur in HSA with values of 2.6–9.0 nm. And the Lennard-Jones average energy yield shows that the interaction behavior between HSA atoms is dynamic. At a temperature of 35 ℃ of 7.97E + 05 kJ/mol, a temperature of 37 ℃ of 6.78 kJ/mol, and a temperature of 40 ℃ of 7.89E + 05 kJ/mol.