Jingyang Zhang, Ran Gu, Guotai Wang, Hongzhi Xie, Lixu Gu
{"title":"SS-CADA:冠状动脉分割的半监督跨解剖域适应","authors":"Jingyang Zhang, Ran Gu, Guotai Wang, Hongzhi Xie, Lixu Gu","doi":"10.1109/ISBI48211.2021.9434016","DOIUrl":null,"url":null,"abstract":"The segmentation of coronary arteries by convolutional neural network is promising yet requires a large amount of labor-intensive manual annotations. Transferring knowledge from retinal vessels in widely-available public labeled fundus images (FIs) has a potential to reduce the annotation requirement for coronary artery segmentation in X-ray angiograms (XAs) due to their common tubular structures. However, it is challenged by the cross-anatomy domain shift due to the intrinsically different vesselness characteristics in different anatomical regions under even different imaging protocols. To solve this problem, we propose a Semi-Supervised Cross-Anatomy Domain Adaptation (SS-CADA) which requires only limited annotations for coronary arteries in $\\text{X}\\text{A}\\text{s}$. With the supervision from a small number of labeled XAs and publicly available labeled $\\text{F}\\text{I}\\text{s}$, we propose a vesselness-specific batch normalization (VSBN) to individually normalize feature maps for them considering their different cross-anatomic vesselness characteristics. In addition, to further facilitate the annotation efficiency, we employ a self-ensembling mean-teacher (SE-MT) to exploit abundant unlabeled XAs by imposing a prediction consistency constraint. Extensive experiments show that our SS-CADA is able to solve the challenging cross-anatomy domain shift, achieving accurate segmentation for coronary arteries given only a small number of labeled $\\text{X}\\text{A}\\text{s}$.","PeriodicalId":372939,"journal":{"name":"2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI)","volume":"97 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2021-04-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"5","resultStr":"{\"title\":\"SS-CADA: A Semi-Supervised Cross-Anatomy Domain Adaptation for Coronary Artery Segmentation\",\"authors\":\"Jingyang Zhang, Ran Gu, Guotai Wang, Hongzhi Xie, Lixu Gu\",\"doi\":\"10.1109/ISBI48211.2021.9434016\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The segmentation of coronary arteries by convolutional neural network is promising yet requires a large amount of labor-intensive manual annotations. Transferring knowledge from retinal vessels in widely-available public labeled fundus images (FIs) has a potential to reduce the annotation requirement for coronary artery segmentation in X-ray angiograms (XAs) due to their common tubular structures. However, it is challenged by the cross-anatomy domain shift due to the intrinsically different vesselness characteristics in different anatomical regions under even different imaging protocols. To solve this problem, we propose a Semi-Supervised Cross-Anatomy Domain Adaptation (SS-CADA) which requires only limited annotations for coronary arteries in $\\\\text{X}\\\\text{A}\\\\text{s}$. With the supervision from a small number of labeled XAs and publicly available labeled $\\\\text{F}\\\\text{I}\\\\text{s}$, we propose a vesselness-specific batch normalization (VSBN) to individually normalize feature maps for them considering their different cross-anatomic vesselness characteristics. In addition, to further facilitate the annotation efficiency, we employ a self-ensembling mean-teacher (SE-MT) to exploit abundant unlabeled XAs by imposing a prediction consistency constraint. Extensive experiments show that our SS-CADA is able to solve the challenging cross-anatomy domain shift, achieving accurate segmentation for coronary arteries given only a small number of labeled $\\\\text{X}\\\\text{A}\\\\text{s}$.\",\"PeriodicalId\":372939,\"journal\":{\"name\":\"2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI)\",\"volume\":\"97 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2021-04-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"5\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/ISBI48211.2021.9434016\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/ISBI48211.2021.9434016","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
SS-CADA: A Semi-Supervised Cross-Anatomy Domain Adaptation for Coronary Artery Segmentation
The segmentation of coronary arteries by convolutional neural network is promising yet requires a large amount of labor-intensive manual annotations. Transferring knowledge from retinal vessels in widely-available public labeled fundus images (FIs) has a potential to reduce the annotation requirement for coronary artery segmentation in X-ray angiograms (XAs) due to their common tubular structures. However, it is challenged by the cross-anatomy domain shift due to the intrinsically different vesselness characteristics in different anatomical regions under even different imaging protocols. To solve this problem, we propose a Semi-Supervised Cross-Anatomy Domain Adaptation (SS-CADA) which requires only limited annotations for coronary arteries in $\text{X}\text{A}\text{s}$. With the supervision from a small number of labeled XAs and publicly available labeled $\text{F}\text{I}\text{s}$, we propose a vesselness-specific batch normalization (VSBN) to individually normalize feature maps for them considering their different cross-anatomic vesselness characteristics. In addition, to further facilitate the annotation efficiency, we employ a self-ensembling mean-teacher (SE-MT) to exploit abundant unlabeled XAs by imposing a prediction consistency constraint. Extensive experiments show that our SS-CADA is able to solve the challenging cross-anatomy domain shift, achieving accurate segmentation for coronary arteries given only a small number of labeled $\text{X}\text{A}\text{s}$.