全基因组测序:了解COVID-19感染患者基因型和表型多样性以帮助控制疫情的有力工具

Rayan A. Ahmed
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摘要

在中国武汉(2019年12月),报告了来源不明的病毒性肺炎病例。这一紧急情况引起了全球的关注。为了确定致病潜力,中国多学科工作队进行了联合努力。在广泛的研究应用中,一个不可分割的组成部分不仅是确定病原体,而且是确定生物样品中的核酸碱基顺序。确定遗传物质特征及其顺序的研究技术称为“测序”,分为三代。此外,进行了第一次测序尝试,并确定了从中国分离的样本与其他先前测序的冠状病毒之间的遗传联系。然而,在临床和实验室表现以及疾病严重程度方面,患者之间存在差异。病原遗传物质测序成功后,将其命名为新型冠状病毒。本文对来自印度、孟加拉国、厄瓜多尔等不同国家的新型冠状病毒感染患者的基因组序列与中国(首例报告病例)的基因组序列进行比较,不仅寻求识别新型冠状病毒基因组序列之间的异同,而且将其与其他形式的冠状病毒科进行比较。利用这些数据将有助于做出正确的决定,最大限度地减少疫情的负面后果。
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Whole Genome Sequencing: A Powerful Tool for Understanding the Diversity of Genotypes and Phenotypes among COVID-19 Infected Patients to Help in Controlling Outbreaks
In Wuhan, China (December 2019), viral pneumonia cases of uncertain origin have been reported. The emergency has drawn global attention. To determine the pathogenic potential, joint efforts were conducted by Chinese Multidisciplinary Task Forces. An integral component of wide range of research applications is not only determining the causative agent but also the nucleic acid bases order in biological samples. Research techniques determining genetic material features and its order is called “sequencing”, classified into three generations. Moreover, the first sequencing attempt was conducted and a genetic link identified between samples isolated from China and other previously sequenced Coronaviruses. However, there was patient to patient diversity in terms of clinical and laboratory manifestations and diseases severity. After the genetic material of the causative agent was successfully sequenced, it was named the novel coronavirus causing COVID-19. Here, we review the genome sequences of novel coronavirus infected patients from different countries such as India, Bangladesh and Ecuador compared to China (first reported case), seeking not only to recognize similarities and differences between genome sequences of novel coronavirus, but also to compare them with other forms of coronaviruses family. Utilizing this data will assist in making right decisions minimizing negative consequences of the outbreak.
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