在Taverna 2.2中为hpc支持的科学工作流提供了一个UNICORE插件

Sonja Holl, O. Zimmermann, M. Hofmann-Apitius
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引用次数: 7

摘要

随着科学工作流程变得越来越复杂,并应用计算密集型方法来处理越来越大的数据量,访问HPC资源变得势在必行。我们描述了酒馆工作流系统的一个新插件的开发,它通过UNICORE网格中间件提供对HPC/网格资源的透明和安全的访问,同时保持了易用性,这是科学工作流系统成功的主要原因。一个来自生物信息学领域的用例通过创建一个科学的工作流,在集群资源上并行执行中心部分,展示了UNICORE插件在Tavern A中的潜力。
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A UNICORE Plugin for HPC-Enabled Scientific Workflows in Taverna 2.2
As scientific workflows are becoming more complex and apply compute-intensive methods to increasingly large data volumes, access to HPC resources is becoming mandatory. We describe the development of a novel plug in for the Tavern a workflow system, which provides transparent and secure access to HPC/grid resources via the UNICORE grid middleware, while maintaining the ease of use that has been the main reason for the success of scientific workflow systems. A use case from the bioinformatics domain demonstrates the potential of the UNICORE plug in for Tavern a by creating a scientific workflow that executes the central parts in parallel on a cluster resource.
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