网络药理学结合分子对接探讨乌梅丸治疗胃癌的作用机制

Zhongwen Lu, Shuang Zhang, Fei Teng, Xuanhe Tian, Xijian Liu, Xiaochun Han
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摘要

目的:基于网络药理学和分子对接,探讨乌梅丸治疗胃癌的作用机制。方法:从中药系统药理学数据库中获取乌梅丸的有效成分,从PharmMapper数据库中获取靶点。GC的靶基因通过GeneCards、Therapeutic target Database等数据库进行鉴定。利用两者的交集来确定WMP中与GC相关的有效成分的目标。采用Cytoscape 3.7.0软件建立“复方-中药-成分-靶点”网络图谱,筛选核心成分。使用相互作用基因/蛋白数据库检索工具和Cytoscape 3.7.0对WMP治疗GC的潜在基因进行分析和可视化。通过metscape进行基因本体和京都基因与基因组百科全书路径富集。通过富集评分筛选相关通路,形成“目标-关键通路”网络图。利用KM绘图仪和基因表达谱交互分析数据库在线绘制核心基因GC相关生存曲线。使用AutoDock Vina和PyMol软件进行分子对接和可视化。结果:WMP有效成分与本病有99个交叉靶点。蛋白-蛋白相互作用网络拓扑分析揭示了ALB、EGFR、SRC等关键靶点。分子对接结果显示,关键活性成分与核心靶点结合良好,ALB和ESR1基因在生存分析中具有显著性。结论:WMP可通过β -谷甾醇、豆甾醇等作用于ALB、EGFR、SRC等靶点的活性成分治疗GC。其机制可能与幽门螺杆菌感染的上皮细胞信号转导通路有关,具有多靶点、多通路的治疗作用。
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The Mechanism of Action of Network Pharmacology Integrated with Molecular Docking to Explore Wumei Pills in Treating Gastric Cancer
Objective: This study aimed to explore the mechanism of action of Wumei Pills (WMP) in treating gastric cancer (GC) based on network pharmacology and molecular docking. Methods: The Wumei Pills’ active ingredients were obtained from the traditional Chinese medicine system pharmacology database, and the target sites were obtained from the PharmMapper database. GC’ s target genes were identified through GeneCards, the Therapeutic Target Database, and other databases. The intersection of the two was used to determine the target of active ingredients of WMP that were related to GC. Cytoscape 3.7.0 was used to establish the network map of “ compound-traditional Chinese medicine-ingredient-target” to screen the core components. The Search Tool for the Retrieval of Interacting Genes/Proteins database and Cytoscape 3.7.0 were used to analyze and visualize potential genes of WMP in treating GC. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment were conducted through Metascape. The “ target-critical path” network diagram was created by screening relevant pathways with the enrichment score. KM plotter and Gene Expression Profiling Interactive Analysis database were used to draw GC related survival curve online for core genes. AutoDock Vina and PyMol software were used to conduct molecular docking and visualization. Results: There were 99 intersection targets of the active ingredients of WMP and the disease. Protein-protein interaction network topology analysis revealed ALB, EGFR, SRC, and other key targets. Molecular docking results showed that the key active components had good binding with the core target, and ALB and ESR1 genes were significant in survival analysis. Conclusion:WMP could treat GC via beta-sitosterol, stigmasterol, and other active ingredients that acted on ALB, EGFR, SRC, and other targets. The mechanism could be related to the epithelial cell signal transduction pathway in Helicobacter pylori infection, which played a multi-target and multi-pathway therapeutic role.
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