Damaris/Viz:一个非侵入性、适应性强、用户友好的原位可视化框架

Matthieu Dorier, R. Sisneros, T. Peterka, Gabriel Antoniu, B. D. Semeraro
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引用次数: 87

摘要

减少模拟存储的数据量对于下一代大规模计算至关重要。因此,有积极的研究将分析和可视化任务转移到原位运行,即通过共享一些资源更接近模拟。这是有益的,因为它可以避免为后处理存储大量数据的必要性。在本文中,我们关注的是现场可视化的具体情况,其中分析代码与仿真代码并置并运行在相同的资源上。对于原位技术来说,需要对现有代码进行最小的修改,适应性强,并且对运行时间和资源使用的影响都很低,这一点很重要。我们通过Damaris/Viz框架实现了这一点,该框架为Damaris I/O中间件提供了现场可视化支持。使用Damaris作为现有可视化包的桥梁,使我们能够(1)将现有模拟的代码修改减少到最低限度,(2)收集几个可视化工具的功能以提供统一的数据管理接口,(3)使用专用内核隐藏原位可视化的运行时影响,以及(4)通过基于共享内存的通信模型有效地使用内存。在Blue Waters和Grid’5000上进行了实验,以可视化CM1大气模拟和Nek5000 CFD求解器。
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Damaris/Viz: A nonintrusive, adaptable and user-friendly in situ visualization framework
Reducing the amount of data stored by simulations will be of utmost importance for the next generation of large-scale computing. Accordingly, there is active research to shift analysis and visualization tasks to run in situ, that is, closer to the simulation via the sharing of some resources. This is beneficial as it can avoid the necessity of storing large amounts of data for post-processing. In this paper, we focus on the specific case of in situ visualization where analysis codes are collocated with the simulation's code and run on the same resources. It is important for an in situ technique to require minimum modifications to existing codes, be adaptable, and have a low impact on both run times and resource usage. We accomplish this through the Damaris/Viz framework, which provides in situ visualization support to the Damaris I/O middleware. The use of Damaris as a bridge to existing visualization packages allows us to (1) reduce code moditication to a minimum for existing simulations, (2) gather capabilities of several visualization tools to offer a unified data management interface, (3) use dedicated cores to hide the run time impact of in situ visualization and (4) efficiently use memory through a shared-memory-based communication model. Experiments are conducted on Blue Waters and Grid'5000 to visualize the CM1 atmospheric simulation and the Nek5000 CFD solver.
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