超级计算和人工智能在药物发现中的应用展望

Jun Xu, Jiming Ye
{"title":"超级计算和人工智能在药物发现中的应用展望","authors":"Jun Xu, Jiming Ye","doi":"10.14529/jsfi200302","DOIUrl":null,"url":null,"abstract":"This review starts with outlining how science and technology evaluated from last century into high throughput science and technology in modern era due to the Nobel-Prize-level inventions of combinatorial chemistry, polymerase chain reaction, and high-throughput screening. The evolution results in big data accumulated in life sciences and the fields of drug discovery. The big data demands for supercomputing in biology and medicine, although the computing complexity is still a grand challenge for sophisticated biosystems in drug design in this supercomputing era. In order to resolve the real-world issues, artificial intelligence algorithms (specifically machine learning approaches) were introduced, and have demonstrated the power in discovering structure-activity relations hidden in big biochemical data. Particularly, this review summarizes on how people modernize the conventional machine learning algorithms by combing non-numeric pattern recognition and deep learning algorithms, and successfully resolved drug design and high throughput screening issues. The review ends with the perspectives on computational opportunities and challenges in drug discovery by introducing new drug design principles and modeling the process of packing DNA with histones in micrometer scale space, a n example of how a macrocosm object gets into microcosm world.","PeriodicalId":338883,"journal":{"name":"Supercomput. Front. Innov.","volume":"85 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2020-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Perspectives on Supercomputing and Artificial Intelligence Applications in Drug Discovery\",\"authors\":\"Jun Xu, Jiming Ye\",\"doi\":\"10.14529/jsfi200302\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"This review starts with outlining how science and technology evaluated from last century into high throughput science and technology in modern era due to the Nobel-Prize-level inventions of combinatorial chemistry, polymerase chain reaction, and high-throughput screening. The evolution results in big data accumulated in life sciences and the fields of drug discovery. The big data demands for supercomputing in biology and medicine, although the computing complexity is still a grand challenge for sophisticated biosystems in drug design in this supercomputing era. In order to resolve the real-world issues, artificial intelligence algorithms (specifically machine learning approaches) were introduced, and have demonstrated the power in discovering structure-activity relations hidden in big biochemical data. Particularly, this review summarizes on how people modernize the conventional machine learning algorithms by combing non-numeric pattern recognition and deep learning algorithms, and successfully resolved drug design and high throughput screening issues. The review ends with the perspectives on computational opportunities and challenges in drug discovery by introducing new drug design principles and modeling the process of packing DNA with histones in micrometer scale space, a n example of how a macrocosm object gets into microcosm world.\",\"PeriodicalId\":338883,\"journal\":{\"name\":\"Supercomput. Front. Innov.\",\"volume\":\"85 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2020-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Supercomput. Front. Innov.\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.14529/jsfi200302\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Supercomput. Front. Innov.","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.14529/jsfi200302","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1

摘要

本文首先概述了由于组合化学、聚合酶链反应和高通量筛选等诺贝尔奖级别的发明,科学技术如何从上个世纪发展到现代的高通量科学技术。这种进化导致了生命科学和药物发现领域积累的大数据。大数据对生物和医学领域的超级计算提出了要求,尽管在这个超级计算时代,计算复杂性仍然是药物设计中复杂生物系统的一个巨大挑战。为了解决现实世界的问题,引入了人工智能算法(特别是机器学习方法),并展示了发现隐藏在大生化数据中的结构-活性关系的能力。特别地,本文总结了人们如何将非数字模式识别和深度学习算法相结合,使传统的机器学习算法现代化,并成功地解决了药物设计和高通量筛选问题。最后,通过介绍新的药物设计原则和在微米尺度空间内用组蛋白包装DNA的过程建模,回顾了药物发现中的计算机会和挑战,这是一个宏观物体如何进入微观世界的例子。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Perspectives on Supercomputing and Artificial Intelligence Applications in Drug Discovery
This review starts with outlining how science and technology evaluated from last century into high throughput science and technology in modern era due to the Nobel-Prize-level inventions of combinatorial chemistry, polymerase chain reaction, and high-throughput screening. The evolution results in big data accumulated in life sciences and the fields of drug discovery. The big data demands for supercomputing in biology and medicine, although the computing complexity is still a grand challenge for sophisticated biosystems in drug design in this supercomputing era. In order to resolve the real-world issues, artificial intelligence algorithms (specifically machine learning approaches) were introduced, and have demonstrated the power in discovering structure-activity relations hidden in big biochemical data. Particularly, this review summarizes on how people modernize the conventional machine learning algorithms by combing non-numeric pattern recognition and deep learning algorithms, and successfully resolved drug design and high throughput screening issues. The review ends with the perspectives on computational opportunities and challenges in drug discovery by introducing new drug design principles and modeling the process of packing DNA with histones in micrometer scale space, a n example of how a macrocosm object gets into microcosm world.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
A Supercomputer-Based Modeling System for Short-Term Prediction of Urban Surface Air Quality River Routing in the INM RAS-MSU Land Surface Model: Numerical Scheme and Parallel Implementation on Hybrid Supercomputers Data Assimilation by Neural Network for Ocean Circulation: Parallel Implementation Multistage Iterative Method to Tackle Inverse Problems of Wave Tomography Machine Learning Approaches to Extreme Weather Events Forecast in Urban Areas: Challenges and Initial Results
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1