利用随机森林从微阵列数据中寻找疾病相关基因

Kazutaka Nishiwaki, K. Kanamori, H. Ohwada
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引用次数: 9

摘要

大量的dna微阵列数据库现在可以在互联网上广泛使用。最近,由于数据量太大,研究人员无法使用传统技术进行分析,因此人们对使用机器学习技术分析微阵列数据的兴趣越来越大。在这项研究中,我们提出了一种使用随机森林(一种机器学习技术)从微阵列数据中寻找疾病相关基因的方法。更具体地说,我们专注于阿尔茨海默病,并在实验中使用与阿尔茨海默病相关的微阵列数据。结果,我们发现了一些被认为与阿尔茨海默病有关的基因。结果中发现的一些基因已经被研究了与阿尔茨海默病的相关性,这证明我们提出的方法在使用微阵列数据寻找疾病相关基因方面是成功的。此外,所提出的方法在为生物学家、医学科学家和认知计算研究人员提供新知识方面很有用,因为以前没有针对阿尔茨海默病的相关基因的研究工作。
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Finding a disease-related gene from microarray data using random forest
Numerous databases of DNA-microarrays are now widely available on the internet. Recently, there has been increasing interest in the analysis of microarray data using machine-learning techniques due to the amount of data, which is too massive for researchers to analyze using conventional techniques. In this study, we propose a method of finding a disease-related gene from microarray data using random forest, a machine-learning technique. More specifically, we focused on Alzheimer's disease and used microarray data related to Alzheimer's disease in the experiments. In the result, we found some genes that are believed to be related to Alzheimer's disease. Some genes discovered in the result have been investigated for their relevance to Alzheimer's disease, and this proves that our proposed methodology was successful in finding disease-related genes using microarray data. In addition, the proposed methodology is useful in providing new knowledge for biologists, medical scientists, and cognitive computing researchers since there is no previous work on genes that focused on finding a disease-related gene for Alzheimer's disease.
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