可重复建模:为什么这么难?

D. Holzworth, N. Huth
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引用次数: 0

摘要

:大规模建模包括创建将数据连接到工具、实用程序和模型的工作流。通常这是一个随时间演进的手动过程(例如,没有自动化的脚本)。除非有清晰、详细的文档,否则在将来的某个时候重现模拟结果是非常困难的。期刊论文对模拟结果的描述往往是不可重复的!软件开发行业创建Docker映像是为了非常清楚地定义可复制的执行环境。docker用户创建一个简单的基于文本的配方(dockerfile),将软件应用程序(模型)及其依赖项安装到一个可以重复执行的映像中。如果映像被推送到docker存储库(例如DockerHub),那么它将被其他人访问。这通过将执行环境封装到一个可共享的映像中来解决部分再现性问题。它不能解决识别模型输入数据的问题。
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Reproducible modelling: Why is it so hard?
: Modelling at scale involves creating workflows that connect data to tools, utilities, and models. Often this is a manual process (e.g. scripts with no automation) that evolves over time. Unless there is clear, detailed documentation, that is accessible, it can be very difficult to reproduce simulation results at some point in the future. Journal paper descriptions of simulation results are often not reproducible! The software development industry created Docker images to very clearly define an execution environment that is reproducible. The docker user creates a simple text-based recipe (dockerfile) that installs the software application (model) and its dependencies into an image that can be executed repeatedly. If the image is pushed to a docker repository (e.g. DockerHub) then it will be accessible by others. This solves part of the reproducibility problem by encapsulating the execution environment into a sharable image. It doesn’t solve the problem of identifying the model input data.
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