生物信息学空间中开放关联数据的使用:一个案例研究

R. Çelebi, Ozgur Gumus, Yeşim AYDIN SON
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引用次数: 3

摘要

在生命科学中,语义网可以支持生物和健康信息学的许多方面,从植物遗传学到药物发现等领域都出现了令人兴奋的应用。对开放链接数据使用语义技术提供了两种优势:通过单一框架搜索多个数据集的能力,以及搜索跨不同数据集的关系和关系路径的能力。Bio2RDF项目创建了一个跨生物数据库的连贯链接数据网络。作为Bio2RDF项目的一部分,在语义网上建立了一个集成的生物信息学仓库。在本文中,定义了一个查询多个远程数据源的用例,这些数据源通过Bio2RDF在语义上可用。对传统搜索技术的结果进行了验证,并对未来的发展方向进行了讨论。
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Use of open linked data in bioinformatics space: A case study
In the life sciences, semantic web can support many aspects of bio- and health informatics, with exciting applications appearing in areas ranging from plant genetics to drug discovery. Using semantic technologies with open linked data, provides two kinds of advantages: ability to search multiple datasets through a single framework and ability to search relationships and paths of relationships that go across different datasets. The Bio2RDF project creates a network of coherently linked data across the biological databases. As part of the Bio2RDF project, an integrated bioinformatics warehouse on the semantic web is built. In this paper, a use case with a query for multiple distant data sources which are semantically available through Bio2RDF is defined. The validation of the results by traditional search techniques and discussion for future directions is presented.
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