LCM-DS:一种基于Dempster-Shafer证据理论预测新药药物相互作用的新方法

Jianyu Shi, Ke Gao, Xuequn Shang, S. Yiu
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引用次数: 8

摘要

迫切需要发现或预测可能引起严重药物不良反应的ddi。然而,ddi的临床前检测成本较高。基于相似度的计算方法可以作为实验方法的辅助。利用上市前药物的相似性,他们能够大规模地预测ddi。然而,它们忽略了ddi和非ddi之间的拓扑结构,并且具有训练慢和内存大的负担。或者,它们承受着一种偏见,即新给药和ddi较多的药物之间的配对往往会获得较高的排名。更重要的是,它们缺乏多种预测的有效组合。为了解决这些问题,我们开发了一种基于局部分类的模型(LCM),该模型具有训练速度快,内存需求少以及没有偏见的优点。我们进一步设计了一种新的基于Dempster-Shafer (DS)证据理论的监督融合算法,用于组合多个预测。最后,实验表明,我们的LCM-DS明显优于三种最先进的方法,并且优于单个lcm和经典融合算法。
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LCM-DS: A novel approach of predicting drug-drug interactions for new drugs via Dempster-Shafer theory of evidence
There is an urgent need to discover or predict DDIs, which would cause serious adverse drug reactions. However, preclinical detection of DDIs bear high cost. Similarity-based computational approaches can be the assistance of experimental approaches. Utilizing pre-market drug similarities, they are able to predict DDIs on a large scale. However, they neglect the topological structure among DDIs and non-DDIs and have a burden of slow training and much memory. Or, they bear the bias that the pairs between a newly-given drug and the drugs having many DDIs tend to obtain high ranks. More importantly, they lack an effective combination of multiple predictions. To address these issues, we develop a local classification-based model (LCM), which has the advantages of faster training, less memory requirement as well as no that bias. We further design a novel supervised algorithm of fusion based on Dempster-Shafer (DS) theory of evidence for combine multiple predictions. Finally, the experiments demonstrate that our LCM-DS is significantly superior to three state-of-the-art approaches and outperforms both individual LCMs and classical fusion algorithms.
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