{"title":"LCM-DS:一种基于Dempster-Shafer证据理论预测新药药物相互作用的新方法","authors":"Jianyu Shi, Ke Gao, Xuequn Shang, S. Yiu","doi":"10.1109/BIBM.2016.7822571","DOIUrl":null,"url":null,"abstract":"There is an urgent need to discover or predict DDIs, which would cause serious adverse drug reactions. However, preclinical detection of DDIs bear high cost. Similarity-based computational approaches can be the assistance of experimental approaches. Utilizing pre-market drug similarities, they are able to predict DDIs on a large scale. However, they neglect the topological structure among DDIs and non-DDIs and have a burden of slow training and much memory. Or, they bear the bias that the pairs between a newly-given drug and the drugs having many DDIs tend to obtain high ranks. More importantly, they lack an effective combination of multiple predictions. To address these issues, we develop a local classification-based model (LCM), which has the advantages of faster training, less memory requirement as well as no that bias. We further design a novel supervised algorithm of fusion based on Dempster-Shafer (DS) theory of evidence for combine multiple predictions. Finally, the experiments demonstrate that our LCM-DS is significantly superior to three state-of-the-art approaches and outperforms both individual LCMs and classical fusion algorithms.","PeriodicalId":345384,"journal":{"name":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","volume":"185 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2016-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"8","resultStr":"{\"title\":\"LCM-DS: A novel approach of predicting drug-drug interactions for new drugs via Dempster-Shafer theory of evidence\",\"authors\":\"Jianyu Shi, Ke Gao, Xuequn Shang, S. Yiu\",\"doi\":\"10.1109/BIBM.2016.7822571\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"There is an urgent need to discover or predict DDIs, which would cause serious adverse drug reactions. However, preclinical detection of DDIs bear high cost. Similarity-based computational approaches can be the assistance of experimental approaches. Utilizing pre-market drug similarities, they are able to predict DDIs on a large scale. However, they neglect the topological structure among DDIs and non-DDIs and have a burden of slow training and much memory. Or, they bear the bias that the pairs between a newly-given drug and the drugs having many DDIs tend to obtain high ranks. More importantly, they lack an effective combination of multiple predictions. To address these issues, we develop a local classification-based model (LCM), which has the advantages of faster training, less memory requirement as well as no that bias. We further design a novel supervised algorithm of fusion based on Dempster-Shafer (DS) theory of evidence for combine multiple predictions. Finally, the experiments demonstrate that our LCM-DS is significantly superior to three state-of-the-art approaches and outperforms both individual LCMs and classical fusion algorithms.\",\"PeriodicalId\":345384,\"journal\":{\"name\":\"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)\",\"volume\":\"185 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2016-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"8\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/BIBM.2016.7822571\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/BIBM.2016.7822571","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
LCM-DS: A novel approach of predicting drug-drug interactions for new drugs via Dempster-Shafer theory of evidence
There is an urgent need to discover or predict DDIs, which would cause serious adverse drug reactions. However, preclinical detection of DDIs bear high cost. Similarity-based computational approaches can be the assistance of experimental approaches. Utilizing pre-market drug similarities, they are able to predict DDIs on a large scale. However, they neglect the topological structure among DDIs and non-DDIs and have a burden of slow training and much memory. Or, they bear the bias that the pairs between a newly-given drug and the drugs having many DDIs tend to obtain high ranks. More importantly, they lack an effective combination of multiple predictions. To address these issues, we develop a local classification-based model (LCM), which has the advantages of faster training, less memory requirement as well as no that bias. We further design a novel supervised algorithm of fusion based on Dempster-Shafer (DS) theory of evidence for combine multiple predictions. Finally, the experiments demonstrate that our LCM-DS is significantly superior to three state-of-the-art approaches and outperforms both individual LCMs and classical fusion algorithms.