芯片分析中特征选择的两阶段混合方法

Chung-Hong Lee, Hsin-Chang Yang, Chih-Hong Wu, Yi-Chia Lan
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引用次数: 0

摘要

在本文中,我们描述了一种两阶段杂交方法来选择基因特征并产生用于评估病理概率的显性模式。为了寻找合适的基因作为区分基因调控状态的实验样本,我们采用受试者工作特征(Receiver Operating Characteristic, ROC)方法剔除正常组织与肿瘤之间差异不明显的非显著基因。随后,通过无监督学习算法对这些选择的基因进行聚类,以减少相同条件下的总体训练样本。此外,通过SVM和KNN方法的实验,对得到的样本进行了验证。实验结果表明,我们的方法具有有效减少微阵列分析样本的潜力。
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A Two-Stage Hybrid Approach for Feature Selection in Microarray Analysis
In this paper, we describe a two-stage hybrid approach to select gene features and produce dominant patterns for evaluating the pathological probability. To discover suitable genes as experiment samples for distinguishing the status of gene regulation, we utilized Receiver Operating Characteristic (ROC) method to eliminate non-significant genes of unapparent variation between normal tissues and tumors. Subsequently, these selected genes are clustered through an unsupervised learning algorithm to reduce overall training samples under the same condition. In addition, the resulting samples have been verified by means of experimenting with the SVM and KNN methods. The experimental results show that our approach has potentials to effectively reduce samples for microarray analysis.
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