基于DNA的方法推断濒危顶级食肉动物饮食灵活性的前景和局限性

S. Arnaud-Haond
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摘要

通过对新西兰濒危海燕粪便样本进行元条形码编码,作者评估了其觅食行为的性质和时空灵活性,以及由此产生的饮食。这种dna非侵入性方法的结果确定了一些预期的和意想不到的猎物,其中一些需要进一步调查,可能是由于参考数据库的巨大空白。它们还揭示了觅食行为的时间(孵化前后)和空间(相距仅1.5公里的种群)灵活性,此外还表明了种群周围渔业活动的可能影响。因此,这项研究既强调了粪便非侵入性元条形码方法的力量,也强调了这种分析可以为保护提供的重要结果,指出了饮食灵活性的潜力,这可能是这种标志性的濒危物种恢复能力所必需的。作者对新西兰濒危海鸟tāiko (Procellaria westlandica)粪便样本中的环境DNA进行了元条形码编码,以更好地了解其觅食行为和营养生态学。比较了两个季节和两个亚种群,以评估tāiko潜在饮食的时空变化。作者发现,令人惊讶的是,在tāiko的粪便样本中,talitrid片脚类动物的出现频率和相对序列读取数都占主导地位。然而,与预期更一致的是,鱼类和头足类动物也是tāikos饮食的重要组成部分,其中重要的商业深海物种(hoki)占突出地位,因此表明由于副渔获物与渔业存在潜在冲突。DNA觅食风暴海燕:8:87-94。
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The promise and limits of DNA based approach to infer diet flexibility in endangered top predators
work, the authors assessed the nature and spatio-temporal flexibility of the foraging behaviour and consequent diet of the endangered petrel Procellaria westlandica from New-Zealand through metabarcoding of faeces samples. The results of this dDNA, non-invasive approach, identify some expected and also unexpected prey items, some of which require further investigation likely due to large gaps in the reference databases. They also reveal the temporal (before and after hatching) and spatial (across colonies only 1.5km apart) flexibility of the foraging behaviour, additionally suggesting a possible influence of fisheries activities in the surroundings of the colonies. This study thus both underlines the power of the non-invasive metabarcoding approach on faeces, and the important results such analysis can deliver for conservation, pointing a potential for diet flexibility that may be essential for the resilience of this iconic yet endangered species. The authors have used metabarcoding of environmental DNA from fecal samples of tāiko (Procellaria westlandica), an endangered New Zealand seabird, to better understand its foraging behavior and trophic ecology. Two seasons and two sub-colonies were compared to assess temporal and spatial variation in the potential diets of tāiko. The authors found that surprisingly, talitrid amphipods dominated both the frequency of occurrence and relative number of sequence reads in the fecal samples from tāiko. However, more consistent with expectations, fish and cephalopods were also significant components of tāikos diet – with an important commercial deep-sea species (hoki) featuring prominently, thus suggesting a potential conflict with the fishing industry due to bycatch. DNA foraging Storm-Petrels Hydrobates 8:87-94.
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