ILSES:用集合分类鉴定赖氨酸琥珀酰化位点

Wenzheng Bao, Lin Zhu, De-shuang Huang
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引用次数: 3

摘要

赖氨酸琥珀酰化是蛋白质翻译后修饰的重要类型之一,涉及许多细胞过程和严重疾病。然而,用传统的实验方法有效地识别这些地点似乎是费时费力的。这些方法很难满足快速高效鉴定大量琥珀化位点的需要。在这项工作中,提取了琥珀酰化位点的一些理化性质,如氨基酸的理化性质。采用柔性神经树作为分类模型,对上述特征进行整合,生成新的赖氨酸琥珀酰化预测框架ILSES (identification lysine succinylation-sites with ensemble features classification)。该方法能够结合多种特征预测赖氨酸琥珀酰化,具有较高的准确性和实时性。
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ILSES: Identification lysine succinylation-sites with ensemble classification
Lysine succinylation is one of most important types in protein post-translational modification, which is involved in many cellular processes and serious diseases. However, effective recognition of such sites with traditional experiment methods may seem to be treated as time-consuming and laborious. Those methods can hardly meet the need of efficient identification a great deal of succinylated sites at speed. In this work, several physicochemical properties of succinylated sites have been extracted, such as the physicochemical property of the amino acids. Flexible neural tree, which is employed as the classification model, was utilized to integrate above mentioned features for generating a novel lysine succinylation prediction framework named ILSES (identification lysine succinylation-sites with ensemble features classification). Such method owns the ability to combining diverse features to predict lysine succinylation with high accuracy and real time.
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