基于BiLSTM深度学习模型的多发性硬化症生物标志物miRNA数据分析

Nehal M. Ali, Mohamed Shaheen, M. Mabrouk, M. A. Rizka
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引用次数: 0

摘要

高通量数据技术使microRNA分析研究在疾病早期诊断领域不断发展。多发性硬化症是最著名的慢性自身免疫性疾病之一,可导致严重的残疾,包括部分失明、运动障碍和相当大的心理影响。本工作引入了一个完整的BiLSTM深度学习模型,用于分析多发性硬化症患者的miRNA数据,为该疾病的早期发现提供依据。所引入的模型是基于作者先前发表的预处理流程。实验是在治疗和未治疗的多发性硬化症患者的215个转录组miRNA样本数据集上进行的。该方法的敏感性、特异性、精密度、准确度和F1评分分别为(0.785、0.789、0.788、0.8和0.79)。为了确保模型的鲁棒性,将所引入模型的精度与其他两个最先进的模型进行了比较,所提出的BiLSTM相对优于其他文献模型。
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Multiple Sclerosis Biomarkers Detection by a BiLSTM Deep Learning Model for miRNA Data Analysis
High-throughput data technology has enabled studies on microRNA analysis to evolve in the field of early disease diagnosis. Multiple Sclerosis is one of the most known chronic autoimmune diseases that can cause severe disabilities, including partial blindness, motor disabilities, and considerable psychological impact. This work introduces a complete BiLSTM deep learning model for analyzing miRNA data of Multiple Sclerosis patients to provide early detection for this disease. The introduced model is based on a preprocessing flow published earlier by the authors. The experiments were conducted on a dataset of 215 transcriptomic miRNA samples of treated and untreated Multiple Sclerosis patients. The implicated results were quite promising, as the produced sensitivity, specificity, precision, accuracy, and F1 scores of (0.785,0.789,0.788, 0.8, and 0.79) respectively, were achieved. To ensure model robustness, the obtained accuracy of the introduced model was compared to two other state-of-art models, and the proposed BiLSTM has relatively outperformed the other literature models.
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