Julia中的电路景观:支持节约决策的高性能连接建模

Ranjan Anantharaman, K. Hall, Viral B. Shah, A. Edelman
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引用次数: 66

摘要

跨景观的连通性影响了广泛的与保护相关的生态过程,包括物种运动、基因流动、野火、害虫和疾病的传播。最近遥感数据的改进显示了推进连接模型的巨大潜力,但计算限制阻碍了这些进展。为了应对这一挑战,我们将广泛使用的Circuitscape连接包升级为高性能的Julia编程语言。Circuitscape。Jl允许用户通过改进的并行处理和求解器更快地解决问题,并支持应用程序解决更大的问题(例如,具有数亿个单元格的数据集)。我们记录了高达1800%的速度改进。我们还演示了将问题大小缩放到4.37亿个网格单元。这些改进使建模者能够使用更高分辨率的数据,更大的景观,并毫不费力地执行灵敏度分析。这些改进加快了创新的步伐,帮助建模者应对气候变化下物种范围变化等紧迫挑战。我们的生态学家和计算机科学家之间的合作已经导致使用连接模型来通知保护决策。此外,这些下一代连接模型将更快地产生结果,促进与决策者的更强互动。
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Circuitscape in Julia: High Performance Connectivity Modelling to Support Conservation Decisions
Connectivity across landscapes influences a wide range of conservation-relevant ecological processes, including species movements, gene flow, and the spread of wildfire, pests, and diseases. Recent improvements in remote sensing data suggest great potential to advance connectivity models, but computational constraints hinder these advances. To address this challenge, we upgraded the widely-used Circuitscape connectivity package to the high performance Julia programming language. Circuitscape.jl allows users to solve problems faster via improved parallel processing and solvers, and supports applications to larger problems (e.g., datasets with hundreds of millions of cells). We document speed improvements of up to 1800\%. We also demonstrate scaling of problem sizes up to 437 million grid cells. These improvements allow modelers to work with higher resolution data, larger landscapes and perform sensitivity analysis effortlessly. These improvements accelerate the pace of innovation, helping modelers address pressing challenges like species range shifts under climate change. Our collaboration between ecologists and computer scientists has led to the use of connectivity models to inform conservation decisions. Further, these next generation connectivity models will produce results faster, facilitating stronger engagement with decision-makers.
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