{"title":"双聚类工具、双聚类验证和评价函数的新研究","authors":"Haifa Ben Saber, M. Elloumi","doi":"10.5121/IJCSES.2015.6101","DOIUrl":null,"url":null,"abstract":"There are subsets of genes that have similar behavior under subsets of conditions, so we say that they coexpress, but behaveindependently under other subsets of conditions. Discovering such coexpressions can be helpful to uncover genomic knowledge such as gene networks or gene interactions. That is why, it is of utmost importance to make a simultaneous clustering of genes and conditions to identify clusters of genes that are coexpressed under clusters of conditions. This type of clustering is called biclustering. Biclustering is an NP-hard problem. Consequently, heuristic algorithms are typically used to approximate this problem by finding suboptimal solutions. In this paper, we make a new survey on tools , biclusters validation and evaluation functions.","PeriodicalId":415526,"journal":{"name":"International Journal of Computer Science & Engineering Survey","volume":"5 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2015-02-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"7","resultStr":"{\"title\":\"A NEW STUDY ON BICLUSTERING TOOLS, BICLUSTERS VALIDATION AND EVALUATION FUNCTIONS\",\"authors\":\"Haifa Ben Saber, M. Elloumi\",\"doi\":\"10.5121/IJCSES.2015.6101\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"There are subsets of genes that have similar behavior under subsets of conditions, so we say that they coexpress, but behaveindependently under other subsets of conditions. Discovering such coexpressions can be helpful to uncover genomic knowledge such as gene networks or gene interactions. That is why, it is of utmost importance to make a simultaneous clustering of genes and conditions to identify clusters of genes that are coexpressed under clusters of conditions. This type of clustering is called biclustering. Biclustering is an NP-hard problem. Consequently, heuristic algorithms are typically used to approximate this problem by finding suboptimal solutions. In this paper, we make a new survey on tools , biclusters validation and evaluation functions.\",\"PeriodicalId\":415526,\"journal\":{\"name\":\"International Journal of Computer Science & Engineering Survey\",\"volume\":\"5 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2015-02-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"7\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International Journal of Computer Science & Engineering Survey\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.5121/IJCSES.2015.6101\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Journal of Computer Science & Engineering Survey","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.5121/IJCSES.2015.6101","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
A NEW STUDY ON BICLUSTERING TOOLS, BICLUSTERS VALIDATION AND EVALUATION FUNCTIONS
There are subsets of genes that have similar behavior under subsets of conditions, so we say that they coexpress, but behaveindependently under other subsets of conditions. Discovering such coexpressions can be helpful to uncover genomic knowledge such as gene networks or gene interactions. That is why, it is of utmost importance to make a simultaneous clustering of genes and conditions to identify clusters of genes that are coexpressed under clusters of conditions. This type of clustering is called biclustering. Biclustering is an NP-hard problem. Consequently, heuristic algorithms are typically used to approximate this problem by finding suboptimal solutions. In this paper, we make a new survey on tools , biclusters validation and evaluation functions.