NoSQL系统中生物信息学工作流程的数据复制评估

Iasmini Lima, Matheus Oliveira, Diego S. Kieckbusch, M. Holanda, M. E. Walter, Aleteia P. F. Araujo, M. Victorino, Waldeyr M. C. Silva, Sérgio Lifschitz
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引用次数: 3

摘要

生物信息学中的许多研究项目可被视为科学工作流程。生物学家经常用不同的参数运行多次相同的工作流程,以完善他们的数据分析。这些执行生成大量不同格式的文件,这些文件需要存储以供将来评估。新的数据库模型,如NoSQL系统,可以考虑处理大量数据,特别是在分布式系统中。这项工作提出了两个NoSQL数据库管理系统:Cassandra和MongoDB的科学工作流执行的数据复制影响评估。
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An evaluation of data replication for bioinformatics workflows on NoSQL systems
Many research projects in bioinformatics may be viewed as scientific workflows. Biologists often run multiple times the same workflow with different parameters in order to refine their data analysis. These executions generate a large volume of files with different formats, which need to be stored for future evaluations. New database models, like NoSQL systems, could be considered to deal with large volumes of data, particularly in distributed systems. This work presents a data replication impact assessment from the execution of scientific workflows for two NoSQL database management systems: Cassandra and MongoDB.
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