一种改进的基于置换群的倒块交换的染色体排序算法

Afrida Tabassum, Wali Mohammad Abdullah, Najia Manjur, Rehennuma Islam, Ashfaque Ahmed, Shourav Imtiaz Morshed, Rizia Iqbal Tinni, Kazi Lutful Kabir, M. Islam
{"title":"一种改进的基于置换群的倒块交换的染色体排序算法","authors":"Afrida Tabassum, Wali Mohammad Abdullah, Najia Manjur, Rehennuma Islam, Ashfaque Ahmed, Shourav Imtiaz Morshed, Rizia Iqbal Tinni, Kazi Lutful Kabir, M. Islam","doi":"10.1109/MEDITEC.2016.7835373","DOIUrl":null,"url":null,"abstract":"In comparative genomics, a common issue is to find the shortest course of operations for the transformation of one genome into another. During rejoining the blocks, inverted block interchange, a more distinct form of block interchange, gives the option to the blocks to reverse their orientation. In this particular paper, we have presented an improved algorithm to sort circular chromosomes by inverted block interchanges and also compared the performances with a previous algorithm. Our experimental findings justify the fact that accommodation of inverted block interchange ensures results with equal or less number of series of operations in terms of block interchanges.","PeriodicalId":325916,"journal":{"name":"2016 International Conference on Medical Engineering, Health Informatics and Technology (MediTec)","volume":"5 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2016-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"An improved chromosome sorting algorithm by permutation group-based inverted block-interchanges\",\"authors\":\"Afrida Tabassum, Wali Mohammad Abdullah, Najia Manjur, Rehennuma Islam, Ashfaque Ahmed, Shourav Imtiaz Morshed, Rizia Iqbal Tinni, Kazi Lutful Kabir, M. Islam\",\"doi\":\"10.1109/MEDITEC.2016.7835373\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"In comparative genomics, a common issue is to find the shortest course of operations for the transformation of one genome into another. During rejoining the blocks, inverted block interchange, a more distinct form of block interchange, gives the option to the blocks to reverse their orientation. In this particular paper, we have presented an improved algorithm to sort circular chromosomes by inverted block interchanges and also compared the performances with a previous algorithm. Our experimental findings justify the fact that accommodation of inverted block interchange ensures results with equal or less number of series of operations in terms of block interchanges.\",\"PeriodicalId\":325916,\"journal\":{\"name\":\"2016 International Conference on Medical Engineering, Health Informatics and Technology (MediTec)\",\"volume\":\"5 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2016-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2016 International Conference on Medical Engineering, Health Informatics and Technology (MediTec)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/MEDITEC.2016.7835373\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2016 International Conference on Medical Engineering, Health Informatics and Technology (MediTec)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/MEDITEC.2016.7835373","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

在比较基因组学中,一个常见的问题是找到将一个基因组转化为另一个基因组的最短操作过程。在重新连接块的过程中,反向块交换(一种更独特的块交换形式)为块提供了反转其方向的选项。在本文中,我们提出了一种改进的基于倒块交换的圆形染色体排序算法,并与之前的算法进行了性能比较。我们的实验结果证明了这样一个事实,即在块交换方面,容纳倒块交换确保了相等或更少的操作序列的结果。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
An improved chromosome sorting algorithm by permutation group-based inverted block-interchanges
In comparative genomics, a common issue is to find the shortest course of operations for the transformation of one genome into another. During rejoining the blocks, inverted block interchange, a more distinct form of block interchange, gives the option to the blocks to reverse their orientation. In this particular paper, we have presented an improved algorithm to sort circular chromosomes by inverted block interchanges and also compared the performances with a previous algorithm. Our experimental findings justify the fact that accommodation of inverted block interchange ensures results with equal or less number of series of operations in terms of block interchanges.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
DiaHealth: A smart app for complete diabetes lifestyle management A smartphone based application to improve the health care system of Bangladesh Bangladeshi Sign Language Recognition using fingertip position Persuasive health and wellbeing application: A theory-driven design in promoting physical activity Pressure transfer function for aorta model in cardiovascular simulator: Feasibility study of wearable central blood-pressure gauge
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1