用于预测药物-疾病关联的加权多视图学习

S. N. Chandrasekaran, Jun Huan
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引用次数: 4

摘要

药物发现的范式已经从寻找对某种疾病具有治疗特性的新药转变为重新使用现有的已批准药物治疗一种新疾病。药物和疾病之间的联系涉及一个复杂的靶点和途径网络。为了提供新的见解,一直需要有可能从潜在的药物-疾病相互作用中发现新的关联的复杂工具。除了计算工具之外,关于药物、疾病及其活动概况的可用数据也出现了爆炸式增长。一方面,研究人员一直在使用现有的机器学习工具,这些工具在预测关联方面显示出很大的希望,但另一方面,在利用先进的机器学习框架来处理这种数据集成方面一直存在空白。在本文中,我们提出了一种称为加权多视图学习的学习框架,它是多视图学习框架的一种变体,其中假设视图对预测的贡献相同,而我们的方法为每个视图学习权重,因为我们假设某些视图可能比其他视图具有更好的预测能力。
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Weighted multiview learning for predicting drug-disease associations
The paradigm of drug discovery has moved from finding new drugs that exhibit therapeutic properties for a disease to reusing existing approved drugs for a newer disease. The association between a drug and a disease involves a complex network of targets and pathways. In order to provide new insights, there has been a constant need for sophisticated tools that have the potential to discover new associations from the underlying drugs-disease interactions. In addition to computational tools, there has been an explosion of data available in terms of drugs, disease and their activity profiles. On one hand, researchers have been using existing machine learning tools that have shown great promise in predicting associations but on the other hand there has been a void in exploiting advance machine learning frameworks to handle this kind of data integration. In this paper, we propose a learning framework called weighted multi-view learning that is a variant of the Multi-view learning framework in which the views are assumed to contribute equally to the prediction whereas our method learns a weight for each view since we hypothesize that certain views might have better prediction capability than others.
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