利用RAPD-PCR标记对不同杀虫剂作用下棉蚜果胶蚧田间种群的研究

Hanan Salah El-Din Taha
{"title":"利用RAPD-PCR标记对不同杀虫剂作用下棉蚜果胶蚧田间种群的研究","authors":"Hanan Salah El-Din Taha","doi":"10.54536/ajbb.v2i1.1699","DOIUrl":null,"url":null,"abstract":"Seasonally the cotton plant cultivated in Egyptian fields is suffering from the cotton Pink Bollworm Pectinophora gossypiella (Saunders) (Lepidoptera: Gelechiidae) attacking fruits and buds. Insecticide applications reported control failure by the most recommended conventional classes. Monitoring pest DNA changes after sublethal exposure become the new technique to investigate. Then four insecticide treatments were screened by using the molecular marker polymerase chain reaction (PCR) inspection, using four Random amplified polymorphic deoxyribonucleic acid analysis (RAPD-PCR) primers partitioned based on band reproducibility. Result of LC50 was 0.55, 61.1, 69.3, and 0.23 for spinoteram, novaluron, metaflumezone, and dimeuron respectively. The insecticide treatments band of gel produced detected 47 loci ranging from 87 to 63 % polymorphism. The primer efficiency value of PIC =0.361, 0.34, 0.34, 0.355, and 0.262, RP = 5.30, H = 0.473, 0.434, 0.434, 0.462 and 0.31, and MI = 0.10, 0.1386, 0.138, 0.167 and 0.0582 for the same treated samples respectively. Distance and similarity were quantified based on Nei’s and genetic dissimilarity by the UPMGA method then a phylogenetic tree was constructed and grouped the entire genotypes into 2 major clusters and 6 subclusters. The RAPD primers revealed the number of alleles (Na = 0.324, 0.318, 0.318, 0.326, and 0.328), and the effective number of alleles (Ne = 0.571, 0.569, 0.558, 0.574, and 0.5784). The fixation-index (Fst) analysis narrated a very great genetic diversity (Fst = 0.626, 0.684, 0.684, 0.2, and 0.695) exists within the four treated samples respectively. The level of gene flow was (Nm = 0.239, 0.230, 0.230, 0.233, and 0.2187) respectively across the four genotypes studied. Results proved that the RAPD-PCR technique was suitable for distinguishing between insecticide treatments.","PeriodicalId":486574,"journal":{"name":"American Journal of Bioscience and Bioinformatics","volume":"4 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2023-06-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Molecular Investigation Using RAPD-PCR Marker Field Populations of Pectinophora gossypiella Saunders (Lepidoptera: Gelechiidae) Exposed to Some Insecticide\",\"authors\":\"Hanan Salah El-Din Taha\",\"doi\":\"10.54536/ajbb.v2i1.1699\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Seasonally the cotton plant cultivated in Egyptian fields is suffering from the cotton Pink Bollworm Pectinophora gossypiella (Saunders) (Lepidoptera: Gelechiidae) attacking fruits and buds. Insecticide applications reported control failure by the most recommended conventional classes. Monitoring pest DNA changes after sublethal exposure become the new technique to investigate. Then four insecticide treatments were screened by using the molecular marker polymerase chain reaction (PCR) inspection, using four Random amplified polymorphic deoxyribonucleic acid analysis (RAPD-PCR) primers partitioned based on band reproducibility. Result of LC50 was 0.55, 61.1, 69.3, and 0.23 for spinoteram, novaluron, metaflumezone, and dimeuron respectively. The insecticide treatments band of gel produced detected 47 loci ranging from 87 to 63 % polymorphism. The primer efficiency value of PIC =0.361, 0.34, 0.34, 0.355, and 0.262, RP = 5.30, H = 0.473, 0.434, 0.434, 0.462 and 0.31, and MI = 0.10, 0.1386, 0.138, 0.167 and 0.0582 for the same treated samples respectively. Distance and similarity were quantified based on Nei’s and genetic dissimilarity by the UPMGA method then a phylogenetic tree was constructed and grouped the entire genotypes into 2 major clusters and 6 subclusters. The RAPD primers revealed the number of alleles (Na = 0.324, 0.318, 0.318, 0.326, and 0.328), and the effective number of alleles (Ne = 0.571, 0.569, 0.558, 0.574, and 0.5784). The fixation-index (Fst) analysis narrated a very great genetic diversity (Fst = 0.626, 0.684, 0.684, 0.2, and 0.695) exists within the four treated samples respectively. The level of gene flow was (Nm = 0.239, 0.230, 0.230, 0.233, and 0.2187) respectively across the four genotypes studied. Results proved that the RAPD-PCR technique was suitable for distinguishing between insecticide treatments.\",\"PeriodicalId\":486574,\"journal\":{\"name\":\"American Journal of Bioscience and Bioinformatics\",\"volume\":\"4 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-06-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"American Journal of Bioscience and Bioinformatics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.54536/ajbb.v2i1.1699\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"American Journal of Bioscience and Bioinformatics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.54536/ajbb.v2i1.1699","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

在埃及田间种植的棉花季节性地遭受棉铃虫Pectinophora gossypiella (Saunders)(鳞翅目:绵虱科)对果实和芽的侵害。杀虫剂的应用报告了大多数推荐的常规类别的控制失败。监测亚致死暴露后害虫DNA的变化成为研究害虫的新技术。利用4条随机扩增多态性脱氧核糖核酸分析(RAPD-PCR)引物按条带可重复性划分,采用分子标记聚合酶链反应(PCR)检测筛选4种杀虫剂处理。spinoteram、novaluron、metaflumezone和dimeuron的LC50分别为0.55、61.1、69.3和0.23。凝胶处理条带检测到47个位点,多态性范围为87% ~ 63%。同一处理样品的引物效率值PIC分别为0.361、0.34、0.34、0.355、0.262,RP为5.30,H分别为0.473、0.434、0.434、0.462、0.31,MI分别为0.10、0.1386、0.138、0.167、0.0582。采用UPMGA方法,根据Nei′s和遗传不相似度量化距离和相似度,构建系统发育树,将整个基因型分为2大聚类和6个亚聚类。RAPD引物显示等位基因数量(Na = 0.324、0.318、0.318、0.326、0.328)和有效等位基因数量(Ne = 0.571、0.569、0.558、0.574、0.5784)。固定指数(Fst)分析表明,4个处理样品的遗传多样性较高,Fst分别为0.626、0.684、0.684、0.2和0.695。4个基因型的基因流水平分别为(Nm = 0.239、0.230、0.230、0.233和0.2187)。结果表明,RAPD-PCR技术适用于不同杀虫剂处理间的区分。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Molecular Investigation Using RAPD-PCR Marker Field Populations of Pectinophora gossypiella Saunders (Lepidoptera: Gelechiidae) Exposed to Some Insecticide
Seasonally the cotton plant cultivated in Egyptian fields is suffering from the cotton Pink Bollworm Pectinophora gossypiella (Saunders) (Lepidoptera: Gelechiidae) attacking fruits and buds. Insecticide applications reported control failure by the most recommended conventional classes. Monitoring pest DNA changes after sublethal exposure become the new technique to investigate. Then four insecticide treatments were screened by using the molecular marker polymerase chain reaction (PCR) inspection, using four Random amplified polymorphic deoxyribonucleic acid analysis (RAPD-PCR) primers partitioned based on band reproducibility. Result of LC50 was 0.55, 61.1, 69.3, and 0.23 for spinoteram, novaluron, metaflumezone, and dimeuron respectively. The insecticide treatments band of gel produced detected 47 loci ranging from 87 to 63 % polymorphism. The primer efficiency value of PIC =0.361, 0.34, 0.34, 0.355, and 0.262, RP = 5.30, H = 0.473, 0.434, 0.434, 0.462 and 0.31, and MI = 0.10, 0.1386, 0.138, 0.167 and 0.0582 for the same treated samples respectively. Distance and similarity were quantified based on Nei’s and genetic dissimilarity by the UPMGA method then a phylogenetic tree was constructed and grouped the entire genotypes into 2 major clusters and 6 subclusters. The RAPD primers revealed the number of alleles (Na = 0.324, 0.318, 0.318, 0.326, and 0.328), and the effective number of alleles (Ne = 0.571, 0.569, 0.558, 0.574, and 0.5784). The fixation-index (Fst) analysis narrated a very great genetic diversity (Fst = 0.626, 0.684, 0.684, 0.2, and 0.695) exists within the four treated samples respectively. The level of gene flow was (Nm = 0.239, 0.230, 0.230, 0.233, and 0.2187) respectively across the four genotypes studied. Results proved that the RAPD-PCR technique was suitable for distinguishing between insecticide treatments.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Comparative CFD Analysis of Heat Transfer Enhancement in Phase Change Thermal Energy Storage with and without Fins for Solar Energy Storage The Effect of Aqueous Extract of Fenugreek Plant on the Pancreas in Rabbits Induced with Diabetes and the Histological Changes Occurring in Them Sperm Parameters and Testicular Histology of Male Wistar Rats Treated with Phoenix Dactylifera after Consumption of Local Mmahi Salt The Use of Modified Masson’s Trichrome Stain to Recognize the Stratum Corneum in the Epidermis of the Skin and Measure It Insights into the Pathogenesis, Virulence Factors, and Diagnosis of Helicobacter pylori: A Comprehensive Review
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1