{"title":"小拷贝数随机化学反应中自洽记忆的精确动力学","authors":"Moshir Harsh, Peter Sollich","doi":"10.1088/1751-8121/acfd6a","DOIUrl":null,"url":null,"abstract":"Abstract We present a method that captures the fluctuations beyond mean field in chemical reactions in the regime of small copy numbers and hence large fluctuations, using self-consistently determined memory : by integrating information from the past we can systematically improve our approximation for the dynamics of chemical reactions. This memory emerges from a perturbative treatment of the effective action of the Doi-Peliti field theory for chemical reactions. By dressing only the response functions and by the self-consistent replacement of bare responses by the dressed ones, we show how a very small class of diagrams contributes to this expansion, with clear physical interpretations. From these diagrams, a large sub-class can be further resummed to infinite order, resulting in a method that is stable even for large values of the expansion parameter or equivalently large reaction rates. We demonstrate this method and its accuracy on single and multi-species binary reactions across a range of reaction constant values.","PeriodicalId":16785,"journal":{"name":"Journal of Physics A","volume":"20 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2023-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":"{\"title\":\"Accurate dynamics from self-consistent memory in stochastic chemical reactions with small copy numbers\",\"authors\":\"Moshir Harsh, Peter Sollich\",\"doi\":\"10.1088/1751-8121/acfd6a\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Abstract We present a method that captures the fluctuations beyond mean field in chemical reactions in the regime of small copy numbers and hence large fluctuations, using self-consistently determined memory : by integrating information from the past we can systematically improve our approximation for the dynamics of chemical reactions. This memory emerges from a perturbative treatment of the effective action of the Doi-Peliti field theory for chemical reactions. By dressing only the response functions and by the self-consistent replacement of bare responses by the dressed ones, we show how a very small class of diagrams contributes to this expansion, with clear physical interpretations. From these diagrams, a large sub-class can be further resummed to infinite order, resulting in a method that is stable even for large values of the expansion parameter or equivalently large reaction rates. We demonstrate this method and its accuracy on single and multi-species binary reactions across a range of reaction constant values.\",\"PeriodicalId\":16785,\"journal\":{\"name\":\"Journal of Physics A\",\"volume\":\"20 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-10-20\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Physics A\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1088/1751-8121/acfd6a\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Physics A","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1088/1751-8121/acfd6a","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Accurate dynamics from self-consistent memory in stochastic chemical reactions with small copy numbers
Abstract We present a method that captures the fluctuations beyond mean field in chemical reactions in the regime of small copy numbers and hence large fluctuations, using self-consistently determined memory : by integrating information from the past we can systematically improve our approximation for the dynamics of chemical reactions. This memory emerges from a perturbative treatment of the effective action of the Doi-Peliti field theory for chemical reactions. By dressing only the response functions and by the self-consistent replacement of bare responses by the dressed ones, we show how a very small class of diagrams contributes to this expansion, with clear physical interpretations. From these diagrams, a large sub-class can be further resummed to infinite order, resulting in a method that is stable even for large values of the expansion parameter or equivalently large reaction rates. We demonstrate this method and its accuracy on single and multi-species binary reactions across a range of reaction constant values.