SAXS联合GIXOS获得脂质体双层的绝对散射长度密度分布:确定模型生物膜结构的工具

IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Journal of Applied Crystallography Pub Date : 2023-10-20 DOI:10.1107/s1600576723008439
Richard D. Harvey, Gianluca Bello, Alexey G. Kikhney, Jaume Torres, Wahyu Surya, Christian Wölk, Chen Shen
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摘要

脂质膜在生物学中起着至关重要的作用,作为蛋白质等生物分子的宿主基质并促进其功能。它们的结构和对生理相关相互作用(即与膜蛋白)的结构反应为理解生物物理机制提供了关键信息。因此,迫切需要新的方法来了解膜宿主分子对脂质双分子层结构的影响。本文提出了一种纯实验方法,通过辅助分析小角度x射线散射(SAXS)数据和从相同模型膜脂组成的单层的掠射x射线非反射散射(GIXOS)数据获得的裸头组体积,获得脂质体双层的绝对散射长度密度分布和每脂的面积。GIXOS实验数据表明,裸顶组体积随脂质堆积密度变化的变化足够小,可以在不知道双分子层中脂质堆积阶段的情况下用作参考值。这种方法还有一个优点,即参考体积是在与模型膜双层相同的水环境中获得的。该方法的有效性通过几种典型的膜组合物,以及结合跨膜肽的磷脂膜的一个例子来证明。这种方法使我们能够获得绝对尺度而不是相对尺度值,仅使用基于x射线的仪器,保留与SAXS实验相似的分辨率。所提出的方法对于理解膜蛋白对生物膜结构的结构效应具有很大的潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Absolute scattering length density profile of liposome bilayers obtained by SAXS combined with GIXOS: a tool to determine model biomembrane structure
Lipid membranes play an essential role in biology, acting as host matrices for biomolecules like proteins and facilitating their functions. Their structures and structural responses to physiologically relevant interactions ( i.e. with membrane proteins) provide key information for understanding biophysical mechanisms. Hence, there is a crucial need of methods to understand the effects of membrane host molecules on the lipid bilayer structure. Here, a purely experimental method is presented for obtaining the absolute scattering length density profile and the area per lipid of liposomal bilayers, by aiding the analysis of small-angle X-ray scattering (SAXS) data with the volume of bare headgroups obtained from grazing-incidence X-ray off-specular scattering (GIXOS) data of monolayers of the same model membrane lipid composition. The GIXOS data experimentally demonstrate that the variation of the bare headgroup volume upon change in lipid packing density is small enough to allow its usage as a reference value without knowing the lipid packing stage in a bilayer. This approach also has the advantage that the reference volume is obtained in the same aqueous environment as used for the model membrane bilayers. The validity of this method is demonstrated using several typical membrane compositions, as well as one example of a phospholipid membrane with an incorporated transmembrane peptide. This methodology allows us to obtain absolute scale rather than relative scale values using solely X-ray-based instrumentation, retaining a similar resolution to SAXS experiments. The method presented has high potential for understanding the structural effects of membrane proteins on the biomembrane structure.
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来源期刊
CiteScore
10.00
自引率
3.30%
发文量
178
审稿时长
4.7 months
期刊介绍: Many research topics in condensed matter research, materials science and the life sciences make use of crystallographic methods to study crystalline and non-crystalline matter with neutrons, X-rays and electrons. Articles published in the Journal of Applied Crystallography focus on these methods and their use in identifying structural and diffusion-controlled phase transformations, structure-property relationships, structural changes of defects, interfaces and surfaces, etc. Developments of instrumentation and crystallographic apparatus, theory and interpretation, numerical analysis and other related subjects are also covered. The journal is the primary place where crystallographic computer program information is published.
期刊最新文献
SUBGROUPS: a computer tool at the Bilbao Crystallographic Server for the study of pseudo-symmetric or distorted structures. Characterization of sub-micrometre-sized voids in fixed human brain tissue using scanning X-ray microdiffraction. Electronic angle focusing for neutron time-of-flight powder diffractometers. Link between b.c.c.-f.c.c. orientation relationship and austenite morphology in CF8M stainless steel. In situ counter-diffusion crystallization and long-term crystal preservation in microfluidic fixed targets for serial crystallography.
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