全球植物物种鉴定的数字、生物和参与性科学协同:启用全球鉴定服务

Pierre Bonnet, Antoine Affouard, Jean-Christophe Lombardo, Mathias Chouet, Hugo Gresse, Vanessa Hequet, Remi Palard, Maxime Fromholtz, Vincent Espitalier, Hervé Goëau, Benjamin Deneu, Christophe Botella, Joaquim Estopinan, César Leblanc, Maximilien Servajean, François Munoz, Alexis Joly
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引用次数: 0

摘要

人类活动对全球生物多样性的影响越来越大。虽然我们对世界范围内生物多样性的了解还不全面,但为了减轻这些影响,探索有效的方法来描述它是至关重要的。数据存储、交换能力的进步,以及广泛的分类、生态和环境数据库的日益可用性,为实施解决物种和栖息地知识差距的新方法提供了可能性。这种增进的知识反过来又将促进改进管理做法,使领土能够更好地进行地方治理。要满足这些要求,就必须开发创新的工具和方法来满足这些需求。公民科学平台已经成为生成大量生物多样性数据的宝贵资源,这要归功于它们的可见性和对参与领土管理和教育的个人的吸引力。这些平台为训练深度学习模型进行自动物种识别提供了新的机会,利用它们积累的大量多媒体数据。然而,有效地管理、策划和传播这些平台产生的数据和服务仍然是阻碍其目标实现的重大挑战。与此相一致,GUARDEN和MAMBO欧洲项目旨在利用Pl@ntNet参与式科学平台(Affouard et al. 2021)开发和实施新的计算服务,以实现广泛创建植物区系清单。在该项目的实施过程中,采用了各种标准和参考数据集,如POWO(世界植物在线)世界清单和WGSRPD(世界植物分布记录地理计划)标准,为创建通过可视化分析帮助植物识别的全球服务奠定了基础。该服务依赖于NoSQL(非结构化查询语言)数据管理系统ArangoDB (Arango数据库),利用最先进的自动视觉分类模型(视觉转换器),并在分布式IT(信息技术)基础设施上运行,该基础设施利用了对支持该计划感兴趣的合作利益相关者的能力。全球范围内的自动化工作流程已经建立,专门用于收集、分析和传播植物物种的插图。这些工作流程现在使开发新的信息技术工具成为可能,这些工具有助于描述和监测物种和栖息地的保护状况。将提供一个全面的介绍,突出所取得的重大进展,以分享在其发展过程中吸取的经验教训,并确保在科学界广泛采用这项服务。
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Synergizing Digital, Biological, and Participatory Sciences for Global Plant Species Identification: Enabling access to a worldwide identification service
Human activities have a growing impact on global biodiversity. While our understanding of biodiversity worldwide is not yet comprehensive, it is crucial to explore effective means of characterizing it in order to mitigate these impacts. The advancements in data storage, exchange capabilities, and the increasing availability of extensive taxonomic, ecological, and environmental databases offer possibilities for implementing new approaches that can address knowledge gaps regarding species and habitats. This enhanced knowledge will, in turn, facilitate improved management practices and enable better local governance of territories. Meeting these requirements necessitates the development of innovative tools and methods to respond to these needs. Citizen science platforms have emerged as valuable resources for generating large amounts of biodiversity data, thanks to their visibility and attractiveness to individuals involved in territorial management and education. These platforms present new opportunities to train deep learning models for automated species recognition, leveraging the substantial volumes of multimedia data they accumulate. However, effectively managing, curating, and disseminating the data and services generated by these platforms remains a significant challenge that hinders the achievement of their objectives. In line with this, the GUARDEN and MAMBO European projects aim to utilize the Pl@ntNet participatory science platform (Affouard et al. 2021) to develop and implement novel computational services to enable the widespread creation of floristic inventories. In the pursuit of this project, various standards and reference datasets have been employed, such as the POWO (Plants of the World Online) world checklist and the WGSRPD (World Geographical Scheme for Recording Plant Distributions) standard, to establish a foundation for creating a global service that aids in plant identification through visual analysis. This service relies on a NoSQL (Not Only Structured Query Language) data management system ArangoDB (Arango Database), utilizes state-of-the-art automated visual classification models (vision transformers), and operates on a distributed IT (Information Technology) infrastructure that leverages the capabilities of collaborative stakeholders interested in supporting this initiative. Global-scale automated workflows have been established specifically for the collection, analysis, and dissemination of illustrated occurrences of plant species. These workflows now enable the development of new IT tools that facilitate the description and monitoring of species and habitat conservation statuses. A comprehensive presentation highlighting the significant advancements achieved will be provided to share the lessons learned during its development and ensure the widespread adoption of this service within the scientific community.
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