对粮食、生物能源和流行病影响的气候聚类和纵向分析

IF 3.3 3区 生物学 Q2 MICROBIOLOGY Phytobiomes Journal Pub Date : 2023-06-01 DOI:10.1094/pbiomes-02-22-0007-r
John Lagergren, Mikaela Cashman, Veronica Melesse Vergara, Paul Eller, Joao Gabriel Felipe Machado Gazolla, Hari Chhetri, Jared Streich, Sharlee Climer, Peter Thornton, Wayne Joubert, Daniel Jacobson
{"title":"对粮食、生物能源和流行病影响的气候聚类和纵向分析","authors":"John Lagergren, Mikaela Cashman, Veronica Melesse Vergara, Paul Eller, Joao Gabriel Felipe Machado Gazolla, Hari Chhetri, Jared Streich, Sharlee Climer, Peter Thornton, Wayne Joubert, Daniel Jacobson","doi":"10.1094/pbiomes-02-22-0007-r","DOIUrl":null,"url":null,"abstract":"Predicted growth in world population will put unparalleled stress on the need for sustainable energy and global food production, as well as increase the likelihood of future pandemics. In this work, we identify high-resolution environmental zones in the context of a changing climate and predict longitudinal processes relevant to these challenges. We do this using exhaustive vector comparison methods that measure the climatic similarity between all locations on Earth at high geospatial resolution relative to global-scale analyses. The results are captured as networks, in which edges between geolocations are defined if their historical climate similarities exceed a threshold. We apply Markov clustering and our novel correlation of correlations method to the resulting climatic networks, which provides unprecedented agglomerative and longitudinal views of climatic relationships across the globe. The methods performed here resulted in the fastest (9.37 × 10 18 operations/s) and one of the largest 168.7 × 10 21 operations) scientific computations ever performed, with more than 100 quadrillion edges considered for a single climatic network. Our climatic analysis reveals areas of the world experiencing rapid environmental changes, which can have important implications for global carbon fluxes and zoonotic spillover events. Correlation and network analyses of this kind are widely applicable across computational and predictive biology domains, including systems biology, ecology, carbon cycles, biogeochemistry, and zoonosis research.","PeriodicalId":48504,"journal":{"name":"Phytobiomes Journal","volume":null,"pages":null},"PeriodicalIF":3.3000,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"4","resultStr":"{\"title\":\"Climatic Clustering and Longitudinal Analysis with Impacts on Food, Bioenergy, and Pandemics\",\"authors\":\"John Lagergren, Mikaela Cashman, Veronica Melesse Vergara, Paul Eller, Joao Gabriel Felipe Machado Gazolla, Hari Chhetri, Jared Streich, Sharlee Climer, Peter Thornton, Wayne Joubert, Daniel Jacobson\",\"doi\":\"10.1094/pbiomes-02-22-0007-r\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Predicted growth in world population will put unparalleled stress on the need for sustainable energy and global food production, as well as increase the likelihood of future pandemics. In this work, we identify high-resolution environmental zones in the context of a changing climate and predict longitudinal processes relevant to these challenges. We do this using exhaustive vector comparison methods that measure the climatic similarity between all locations on Earth at high geospatial resolution relative to global-scale analyses. The results are captured as networks, in which edges between geolocations are defined if their historical climate similarities exceed a threshold. We apply Markov clustering and our novel correlation of correlations method to the resulting climatic networks, which provides unprecedented agglomerative and longitudinal views of climatic relationships across the globe. The methods performed here resulted in the fastest (9.37 × 10 18 operations/s) and one of the largest 168.7 × 10 21 operations) scientific computations ever performed, with more than 100 quadrillion edges considered for a single climatic network. Our climatic analysis reveals areas of the world experiencing rapid environmental changes, which can have important implications for global carbon fluxes and zoonotic spillover events. Correlation and network analyses of this kind are widely applicable across computational and predictive biology domains, including systems biology, ecology, carbon cycles, biogeochemistry, and zoonosis research.\",\"PeriodicalId\":48504,\"journal\":{\"name\":\"Phytobiomes Journal\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":3.3000,\"publicationDate\":\"2023-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"4\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Phytobiomes Journal\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1094/pbiomes-02-22-0007-r\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Phytobiomes Journal","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1094/pbiomes-02-22-0007-r","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
引用次数: 4

摘要

预计世界人口的增长将对可持续能源和全球粮食生产的需求造成前所未有的压力,并增加未来发生大流行病的可能性。在这项工作中,我们确定了气候变化背景下的高分辨率环境区,并预测了与这些挑战相关的纵向过程。我们使用详尽的矢量比较方法,以相对于全球尺度分析的高地理空间分辨率测量地球上所有地点之间的气候相似性。结果被捕获为网络,如果地理位置之间的历史气候相似性超过阈值,则定义地理位置之间的边缘。我们将马尔可夫聚类和我们的新相关性方法应用于所得到的气候网络,这为全球气候关系提供了前所未有的聚集性和纵向视图。在这里执行的方法产生了最快的(9.37 × 10 18运算/秒)和最大的168.7 × 10 21运算之一)科学计算,在一个单一的气候网络中考虑了超过100千万亿的边缘。我们的气候分析揭示了世界上正在经历快速环境变化的地区,这可能对全球碳通量和人畜共患病溢出事件产生重要影响。这种相关性和网络分析广泛应用于计算和预测生物学领域,包括系统生物学、生态学、碳循环、生物地球化学和人畜共患病研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Climatic Clustering and Longitudinal Analysis with Impacts on Food, Bioenergy, and Pandemics
Predicted growth in world population will put unparalleled stress on the need for sustainable energy and global food production, as well as increase the likelihood of future pandemics. In this work, we identify high-resolution environmental zones in the context of a changing climate and predict longitudinal processes relevant to these challenges. We do this using exhaustive vector comparison methods that measure the climatic similarity between all locations on Earth at high geospatial resolution relative to global-scale analyses. The results are captured as networks, in which edges between geolocations are defined if their historical climate similarities exceed a threshold. We apply Markov clustering and our novel correlation of correlations method to the resulting climatic networks, which provides unprecedented agglomerative and longitudinal views of climatic relationships across the globe. The methods performed here resulted in the fastest (9.37 × 10 18 operations/s) and one of the largest 168.7 × 10 21 operations) scientific computations ever performed, with more than 100 quadrillion edges considered for a single climatic network. Our climatic analysis reveals areas of the world experiencing rapid environmental changes, which can have important implications for global carbon fluxes and zoonotic spillover events. Correlation and network analyses of this kind are widely applicable across computational and predictive biology domains, including systems biology, ecology, carbon cycles, biogeochemistry, and zoonosis research.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
7.40
自引率
6.80%
发文量
42
审稿时长
4 weeks
期刊最新文献
Genetically similar Xanthomonas arboricola pv. pruni strains and associated phage display phenotypic and genotypic variation across 35 years Abiotic stress reorganizes rhizosphere and endosphere network structure of Sorghum bicolor A Specific Resistance Gene to Leptosphaeria maculans, Rlm11, Has a Limited Impact on Brassica napus Mycobiota Compared with Plant Compartment or Cropping Season Effects Fungal communities shift with soybean cyst nematode abundance in soils The root-endophytic microbiome shifts under drought in high-performing sorghum
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1