{"title":"环烯醚萜在治疗寨卡病毒和流感病毒感染中的作用的计算机评价","authors":"Supriyo Saha, Prinsa Prinsa, Vikash Jakhmola, Arun Kumar Mahato, Saloni Srivastava, Kiran Dobhal, Sarkar Kawsar","doi":"10.56899/152.05.35","DOIUrl":null,"url":null,"abstract":"Iridoids have been showing anticancer, antiproliferative, cardioprotective, hepatoprotective, antihyperglycemic, and immune stimulatory activities. Zika and H3N2 viruses belong to the RNA virus category, which was responsible for the reoccurrence of epidemics and pandemics in the last decades. Both infections are the type of zoonotic diseases that transmit very fast. In this manuscript, we selected 59 iridoids (iridoid glycosides, secoiridoids, bis-iridoids, and non-glycosidic iridoids) and performed molecular docking (MD) interaction studies against PDB ID: 7VLG (Zika virus receptor) and PDB ID: 6EUY (H3N2 influenza virus receptor). MD interaction revealed that 2'-O-(4-methoxycinnamoyl) mussaenosidic acid and 6-O-trans-p-Coumaroyl–8-O-acetylshanzhiside methyl ester showed a maximum dock score of –8.6 kcal/mol and –9.2 kcal/mol against PDB ID: 7VLG and PDB ID: 6EUY, respectively. The MD interaction data was confirmed by MD simulation and MMPBSA analysis. MD simulation data showed that RMSD and RMSF were within the limit. MM/PBSA analysis data showed that free binding energy of –21.398 kJ/mol and –127.169 kJ/mol observed with 2'-O-(4-methoxycinnamoyl) mussaenosidic acid–7VLGand 6-O-trans-p-Coumaroyl–8-O-acetylshanzhiside methyl ester–6EUY, respectively. ADMET studies showed that both the final molecules were nontoxic in nature, but they required modification during formulation development. These data confirmed that if we reroute these iridoids toward Zika virus and influenza (H3N2) strains, it will be beneficial for mankind.","PeriodicalId":22801,"journal":{"name":"The Philippine journal of science","volume":"341 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2023-09-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"In Silico Assessment of the Role of Iridoid in the Treatment of Zika and Influenza Virus Infection\",\"authors\":\"Supriyo Saha, Prinsa Prinsa, Vikash Jakhmola, Arun Kumar Mahato, Saloni Srivastava, Kiran Dobhal, Sarkar Kawsar\",\"doi\":\"10.56899/152.05.35\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Iridoids have been showing anticancer, antiproliferative, cardioprotective, hepatoprotective, antihyperglycemic, and immune stimulatory activities. Zika and H3N2 viruses belong to the RNA virus category, which was responsible for the reoccurrence of epidemics and pandemics in the last decades. Both infections are the type of zoonotic diseases that transmit very fast. In this manuscript, we selected 59 iridoids (iridoid glycosides, secoiridoids, bis-iridoids, and non-glycosidic iridoids) and performed molecular docking (MD) interaction studies against PDB ID: 7VLG (Zika virus receptor) and PDB ID: 6EUY (H3N2 influenza virus receptor). MD interaction revealed that 2'-O-(4-methoxycinnamoyl) mussaenosidic acid and 6-O-trans-p-Coumaroyl–8-O-acetylshanzhiside methyl ester showed a maximum dock score of –8.6 kcal/mol and –9.2 kcal/mol against PDB ID: 7VLG and PDB ID: 6EUY, respectively. The MD interaction data was confirmed by MD simulation and MMPBSA analysis. MD simulation data showed that RMSD and RMSF were within the limit. MM/PBSA analysis data showed that free binding energy of –21.398 kJ/mol and –127.169 kJ/mol observed with 2'-O-(4-methoxycinnamoyl) mussaenosidic acid–7VLGand 6-O-trans-p-Coumaroyl–8-O-acetylshanzhiside methyl ester–6EUY, respectively. ADMET studies showed that both the final molecules were nontoxic in nature, but they required modification during formulation development. These data confirmed that if we reroute these iridoids toward Zika virus and influenza (H3N2) strains, it will be beneficial for mankind.\",\"PeriodicalId\":22801,\"journal\":{\"name\":\"The Philippine journal of science\",\"volume\":\"341 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-09-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"The Philippine journal of science\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.56899/152.05.35\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"The Philippine journal of science","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.56899/152.05.35","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
环烯醚萜类化合物具有抗癌、抗增殖、保护心脏、保护肝脏、抗高血糖和免疫刺激等作用。寨卡病毒和H3N2病毒属于RNA病毒类别,在过去的几十年里,它们是流行病和大流行反复发生的原因。这两种感染都是人畜共患疾病,传播速度非常快。在本文中,我们选择了59种环烯醚萜类(环烯醚萜类苷、二环烯醚萜类、双环烯醚萜类和非糖苷环烯醚萜类),并对PDB ID: 7VLG(寨卡病毒受体)和PDB ID: 6EUY (H3N2流感病毒受体)进行了分子对接(MD)相互作用研究。MD互作结果表明,2′- o -(4-甲氧基肉桂基)樟树苷酸和6- o -反式-对香豆酰- 8- o -乙酰山脂苷甲酯对PDB ID为7VLG和6EUY的最大dock评分分别为- 8.6和- 9.2 kcal/mol。MD模拟和MMPBSA分析证实了MD相互作用数据。MD仿真数据表明,RMSD和RMSF均在限定范围内。MM/PBSA分析结果表明,2′- o -(4-甲氧基肉桂基)musaenosidic acid - 7vlg和6- o -反式-对coumaroyl - 8- o -乙酰山芝苷甲酯- 6euy的自由结合能分别为- 21.398 kJ/mol和- 127.169 kJ/mol。ADMET研究表明,这两种最终分子在本质上都是无毒的,但它们需要在配方开发过程中进行修饰。这些数据证实,如果我们对寨卡病毒和流感(H3N2)毒株重新使用环烯醚萜,将对人类有益。
In Silico Assessment of the Role of Iridoid in the Treatment of Zika and Influenza Virus Infection
Iridoids have been showing anticancer, antiproliferative, cardioprotective, hepatoprotective, antihyperglycemic, and immune stimulatory activities. Zika and H3N2 viruses belong to the RNA virus category, which was responsible for the reoccurrence of epidemics and pandemics in the last decades. Both infections are the type of zoonotic diseases that transmit very fast. In this manuscript, we selected 59 iridoids (iridoid glycosides, secoiridoids, bis-iridoids, and non-glycosidic iridoids) and performed molecular docking (MD) interaction studies against PDB ID: 7VLG (Zika virus receptor) and PDB ID: 6EUY (H3N2 influenza virus receptor). MD interaction revealed that 2'-O-(4-methoxycinnamoyl) mussaenosidic acid and 6-O-trans-p-Coumaroyl–8-O-acetylshanzhiside methyl ester showed a maximum dock score of –8.6 kcal/mol and –9.2 kcal/mol against PDB ID: 7VLG and PDB ID: 6EUY, respectively. The MD interaction data was confirmed by MD simulation and MMPBSA analysis. MD simulation data showed that RMSD and RMSF were within the limit. MM/PBSA analysis data showed that free binding energy of –21.398 kJ/mol and –127.169 kJ/mol observed with 2'-O-(4-methoxycinnamoyl) mussaenosidic acid–7VLGand 6-O-trans-p-Coumaroyl–8-O-acetylshanzhiside methyl ester–6EUY, respectively. ADMET studies showed that both the final molecules were nontoxic in nature, but they required modification during formulation development. These data confirmed that if we reroute these iridoids toward Zika virus and influenza (H3N2) strains, it will be beneficial for mankind.