{"title":"基于降维和机器学习的脑血管分叉自动分类","authors":"Ibtissam Essadik , Anass Nouri , Raja Touahni , Romain Bourcier , Florent Autrusseau","doi":"10.1016/j.neuri.2022.100108","DOIUrl":null,"url":null,"abstract":"<div><p>This paper presents a method for the automatic labeling of vascular bifurcations along the Circle of Willis (CoW) in 3D images. Our automatic labeling process uses machine learning as well as dimensionality reduction algorithms to map selected bifurcation features to a lower dimensional space and thereafter classify them. Unlike similar studies in the literature, our main goal here is to avoid a classical registration step commonly applied before resorting to classification. In our approach, we aim to collect various geometric features of the bifurcations of interest, and thanks to dimensionality reduction, to discard the irrelevant ones before using classifiers.</p><p>In this paper, we apply the proposed method to 50 human brain vascular trees imaged via Magnetic Resonance Angiography (MRA). The constructed classifiers were evaluated using the Leave One Out Cross-Validation approach (LOOCV). The experimental results showed that the proposed method could assign correct labels to bifurcations at 96.8% with the Naive Bayes classifier. We also confirmed its functionality by presenting automatic bifurcation labels on independent images.</p></div>","PeriodicalId":74295,"journal":{"name":"Neuroscience informatics","volume":"2 4","pages":"Article 100108"},"PeriodicalIF":0.0000,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S277252862200070X/pdfft?md5=b35eea2b6a51fcd0cc0bb4a5bc9143c1&pid=1-s2.0-S277252862200070X-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Automatic classification of the cerebral vascular bifurcations using dimensionality reduction and machine learning\",\"authors\":\"Ibtissam Essadik , Anass Nouri , Raja Touahni , Romain Bourcier , Florent Autrusseau\",\"doi\":\"10.1016/j.neuri.2022.100108\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>This paper presents a method for the automatic labeling of vascular bifurcations along the Circle of Willis (CoW) in 3D images. Our automatic labeling process uses machine learning as well as dimensionality reduction algorithms to map selected bifurcation features to a lower dimensional space and thereafter classify them. Unlike similar studies in the literature, our main goal here is to avoid a classical registration step commonly applied before resorting to classification. In our approach, we aim to collect various geometric features of the bifurcations of interest, and thanks to dimensionality reduction, to discard the irrelevant ones before using classifiers.</p><p>In this paper, we apply the proposed method to 50 human brain vascular trees imaged via Magnetic Resonance Angiography (MRA). The constructed classifiers were evaluated using the Leave One Out Cross-Validation approach (LOOCV). The experimental results showed that the proposed method could assign correct labels to bifurcations at 96.8% with the Naive Bayes classifier. We also confirmed its functionality by presenting automatic bifurcation labels on independent images.</p></div>\",\"PeriodicalId\":74295,\"journal\":{\"name\":\"Neuroscience informatics\",\"volume\":\"2 4\",\"pages\":\"Article 100108\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2022-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S277252862200070X/pdfft?md5=b35eea2b6a51fcd0cc0bb4a5bc9143c1&pid=1-s2.0-S277252862200070X-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Neuroscience informatics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S277252862200070X\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Neuroscience informatics","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S277252862200070X","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
提出了一种在三维图像中沿威利斯圆(Circle of Willis, CoW)自动标记血管分叉的方法。我们的自动标记过程使用机器学习和降维算法将选择的分岔特征映射到较低维空间,然后对它们进行分类。与文献中的类似研究不同,我们这里的主要目标是避免在诉诸分类之前通常应用的经典注册步骤。在我们的方法中,我们的目标是收集感兴趣的分岔的各种几何特征,并且由于降维,在使用分类器之前丢弃不相关的特征。在本文中,我们将该方法应用于磁共振血管造影(MRA)成像的50个人脑血管树。使用Leave One Out交叉验证方法(LOOCV)评估构建的分类器。实验结果表明,该方法与朴素贝叶斯分类器对分岔的正确率为96.8%。我们还通过在独立图像上呈现自动分岔标签来确认其功能。
Automatic classification of the cerebral vascular bifurcations using dimensionality reduction and machine learning
This paper presents a method for the automatic labeling of vascular bifurcations along the Circle of Willis (CoW) in 3D images. Our automatic labeling process uses machine learning as well as dimensionality reduction algorithms to map selected bifurcation features to a lower dimensional space and thereafter classify them. Unlike similar studies in the literature, our main goal here is to avoid a classical registration step commonly applied before resorting to classification. In our approach, we aim to collect various geometric features of the bifurcations of interest, and thanks to dimensionality reduction, to discard the irrelevant ones before using classifiers.
In this paper, we apply the proposed method to 50 human brain vascular trees imaged via Magnetic Resonance Angiography (MRA). The constructed classifiers were evaluated using the Leave One Out Cross-Validation approach (LOOCV). The experimental results showed that the proposed method could assign correct labels to bifurcations at 96.8% with the Naive Bayes classifier. We also confirmed its functionality by presenting automatic bifurcation labels on independent images.
Neuroscience informaticsSurgery, Radiology and Imaging, Information Systems, Neurology, Artificial Intelligence, Computer Science Applications, Signal Processing, Critical Care and Intensive Care Medicine, Health Informatics, Clinical Neurology, Pathology and Medical Technology