定量构效关系(QSAR)模型预测环境化学物质在胎盘中的转移

IF 3.1 Q2 TOXICOLOGY Computational Toxicology Pub Date : 2022-02-01 DOI:10.1016/j.comtox.2021.100211
Laura Lévêque , Nadia Tahiri , Michael-Rock Goldsmith , Marc-André Verner
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引用次数: 0

摘要

环境中环境化学品的多样性日益增加,其中一些可能是发育毒性物质,这是一个公共卫生问题。这项工作的目的是促进快速和有效的方法来评估产前暴露的发展。定量构效关系(QSAR)建模已成为一种有前途的方法,在发展预测模型的胎盘转移的污染物。从文献中提取105种化学物质的脐带与母体血浆或血清浓度比,并为每种化学物质生成214个分子描述符。使用分子操作环境(MOE)软件和Python和R编程语言建立了10个预测模型。分别使用训练和测试数据集来构建和验证模型。使用适用性域工具v1.0确定适用性域。在MOE和R中的SuperLearner中采用偏最小二乘回归方法建立的模型具有最好的精度和预测性,其内部决定系数(R2)分别为0.88和0.82,交叉验证R2s分别为0.72和0.57,外部R2s分别为0.73和0.74。所有的试验化学品都在适用范围内。本研究的结果表明,QSAR模型可以帮助估计环境化学物质的胎盘转移。
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Quantitative Structure-Activity Relationship (QSAR) modeling to predict the transfer of environmental chemicals across the placenta

The increasing diversity of environmental chemicals in the environment, some of which may be developmental toxicants, is a public health concern. The aim of this work was to contribute to the development of rapid and effective methods to assess prenatal exposure. Quantitative structure–activity relationships (QSAR) modeling has emerged as a promising method in the development of a predictive model for the placental transfer of contaminants. Cord to maternal plasma or serum concentration ratios for 105 chemicals were extracted from the literature, and 214 molecular descriptors were generated for each of these chemicals. Ten predictive models were built using Molecular Operating Environment (MOE) software, and the Python and R programming languages. Training and test datasets were used, respectively, to build and validate the models. The Applicability Domain Tool v1.0 was used to determine the applicability domain. Models developed with the partial least squares regression method in MOE and SuperLearner in R showed the best precision and predictivity, with internal coefficients of determination (R2) of 0.88 and 0.82, cross-validated R2s of 0.72 and 0.57, and external R2s of 0.73 and 0.74, respectively. All test chemicals were within the domain of applicability. The results obtained in this study suggest that QSAR modeling can help estimate the placental transfer of environmental chemicals.

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来源期刊
Computational Toxicology
Computational Toxicology Computer Science-Computer Science Applications
CiteScore
5.50
自引率
0.00%
发文量
53
审稿时长
56 days
期刊介绍: Computational Toxicology is an international journal publishing computational approaches that assist in the toxicological evaluation of new and existing chemical substances assisting in their safety assessment. -All effects relating to human health and environmental toxicity and fate -Prediction of toxicity, metabolism, fate and physico-chemical properties -The development of models from read-across, (Q)SARs, PBPK, QIVIVE, Multi-Scale Models -Big Data in toxicology: integration, management, analysis -Implementation of models through AOPs, IATA, TTC -Regulatory acceptance of models: evaluation, verification and validation -From metals, to small organic molecules to nanoparticles -Pharmaceuticals, pesticides, foods, cosmetics, fine chemicals -Bringing together the views of industry, regulators, academia, NGOs
期刊最新文献
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