{"title":"定量构效关系(QSAR)模型预测环境化学物质在胎盘中的转移","authors":"Laura Lévêque , Nadia Tahiri , Michael-Rock Goldsmith , Marc-André Verner","doi":"10.1016/j.comtox.2021.100211","DOIUrl":null,"url":null,"abstract":"<div><p>The increasing diversity of environmental chemicals in the environment, some of which may be developmental toxicants, is a public health concern. The aim of this work was to contribute to the development of rapid and effective methods to assess prenatal exposure. Quantitative structure–activity relationships (QSAR) modeling has emerged as a promising method in the development of a predictive model for the placental transfer of contaminants. Cord to maternal plasma or serum concentration ratios for 105 chemicals were extracted from the literature, and 214 molecular descriptors were generated for each of these chemicals. Ten predictive models were built using Molecular Operating Environment (MOE) software, and the Python and R programming languages. Training and test datasets were used, respectively, to build and validate the models. The Applicability Domain Tool v1.0 was used to determine the applicability domain. Models developed with the partial least squares regression method in MOE and SuperLearner in R showed the best precision and predictivity, with internal coefficients of determination (R<sup>2</sup>) of 0.88 and 0.82, cross-validated R<sup>2</sup>s of 0.72 and 0.57, and external R<sup>2</sup>s of 0.73 and 0.74, respectively. All test chemicals were within the domain of applicability. The results obtained in this study suggest that QSAR modeling can help estimate the placental transfer of environmental chemicals.</p></div>","PeriodicalId":37651,"journal":{"name":"Computational Toxicology","volume":"21 ","pages":"Article 100211"},"PeriodicalIF":3.1000,"publicationDate":"2022-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2468111321000578/pdfft?md5=4c8c23c2a121692de4fd42f72e6c133d&pid=1-s2.0-S2468111321000578-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Quantitative Structure-Activity Relationship (QSAR) modeling to predict the transfer of environmental chemicals across the placenta\",\"authors\":\"Laura Lévêque , Nadia Tahiri , Michael-Rock Goldsmith , Marc-André Verner\",\"doi\":\"10.1016/j.comtox.2021.100211\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The increasing diversity of environmental chemicals in the environment, some of which may be developmental toxicants, is a public health concern. The aim of this work was to contribute to the development of rapid and effective methods to assess prenatal exposure. Quantitative structure–activity relationships (QSAR) modeling has emerged as a promising method in the development of a predictive model for the placental transfer of contaminants. Cord to maternal plasma or serum concentration ratios for 105 chemicals were extracted from the literature, and 214 molecular descriptors were generated for each of these chemicals. Ten predictive models were built using Molecular Operating Environment (MOE) software, and the Python and R programming languages. Training and test datasets were used, respectively, to build and validate the models. The Applicability Domain Tool v1.0 was used to determine the applicability domain. Models developed with the partial least squares regression method in MOE and SuperLearner in R showed the best precision and predictivity, with internal coefficients of determination (R<sup>2</sup>) of 0.88 and 0.82, cross-validated R<sup>2</sup>s of 0.72 and 0.57, and external R<sup>2</sup>s of 0.73 and 0.74, respectively. All test chemicals were within the domain of applicability. The results obtained in this study suggest that QSAR modeling can help estimate the placental transfer of environmental chemicals.</p></div>\",\"PeriodicalId\":37651,\"journal\":{\"name\":\"Computational Toxicology\",\"volume\":\"21 \",\"pages\":\"Article 100211\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2022-02-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S2468111321000578/pdfft?md5=4c8c23c2a121692de4fd42f72e6c133d&pid=1-s2.0-S2468111321000578-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational Toxicology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2468111321000578\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"TOXICOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Toxicology","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2468111321000578","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"TOXICOLOGY","Score":null,"Total":0}
Quantitative Structure-Activity Relationship (QSAR) modeling to predict the transfer of environmental chemicals across the placenta
The increasing diversity of environmental chemicals in the environment, some of which may be developmental toxicants, is a public health concern. The aim of this work was to contribute to the development of rapid and effective methods to assess prenatal exposure. Quantitative structure–activity relationships (QSAR) modeling has emerged as a promising method in the development of a predictive model for the placental transfer of contaminants. Cord to maternal plasma or serum concentration ratios for 105 chemicals were extracted from the literature, and 214 molecular descriptors were generated for each of these chemicals. Ten predictive models were built using Molecular Operating Environment (MOE) software, and the Python and R programming languages. Training and test datasets were used, respectively, to build and validate the models. The Applicability Domain Tool v1.0 was used to determine the applicability domain. Models developed with the partial least squares regression method in MOE and SuperLearner in R showed the best precision and predictivity, with internal coefficients of determination (R2) of 0.88 and 0.82, cross-validated R2s of 0.72 and 0.57, and external R2s of 0.73 and 0.74, respectively. All test chemicals were within the domain of applicability. The results obtained in this study suggest that QSAR modeling can help estimate the placental transfer of environmental chemicals.
期刊介绍:
Computational Toxicology is an international journal publishing computational approaches that assist in the toxicological evaluation of new and existing chemical substances assisting in their safety assessment. -All effects relating to human health and environmental toxicity and fate -Prediction of toxicity, metabolism, fate and physico-chemical properties -The development of models from read-across, (Q)SARs, PBPK, QIVIVE, Multi-Scale Models -Big Data in toxicology: integration, management, analysis -Implementation of models through AOPs, IATA, TTC -Regulatory acceptance of models: evaluation, verification and validation -From metals, to small organic molecules to nanoparticles -Pharmaceuticals, pesticides, foods, cosmetics, fine chemicals -Bringing together the views of industry, regulators, academia, NGOs