整合多来源高维数据与癌症研究应用的异质性分析。

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2023-04-01 DOI:10.5705/ss.202021.0002
Tingyan Zhong, Qingzhao Zhang, Jian Huang, Mengyun Wu, Shuangge Ma
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引用次数: 0

摘要

本研究的动机是癌症研究,异质性分析在癌症研究中起着重要作用,大致可分为无监督和有监督两种。在监督异质性分析中,有限混合回归(FMR)技术被广泛使用,在该技术下,协变量对亚组反应的影响是不同的。高维分子和最近的组织病理学影像学特征被分别分析,并被证明是有效的异质性分析。为了更简单的分析,它们已被证明包含重叠但也独立的信息。在本文中,我们的目标是通过整合高维分子和组织病理成像特征,进行第一次和更有效的基于fmr的癌症异质性分析。一种惩罚方法被开发用于正则化估计,选择相关变量,同样重要的是,促进独立信息的识别。一致性属性是严格建立的。提出了一种有效的计算算法。对癌症基因组图谱(TCGA)肺癌数据的模拟和分析证明了该方法的实际有效性。总之,本研究为监督癌症异质性分析提供了一种实用的新方法。
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HETEROGENEITY ANALYSIS VIA INTEGRATING MULTI-SOURCES HIGH-DIMENSIONAL DATA WITH APPLICATIONS TO CANCER STUDIES.

This study has been motivated by cancer research, in which heterogeneity analysis plays an important role and can be roughly classified as unsupervised or supervised. In supervised heterogeneity analysis, the finite mixture of regression (FMR) technique is used extensively, under which the covariates affect the response differently in subgroups. High-dimensional molecular and, very recently, histopathological imaging features have been analyzed separately and shown to be effective for heterogeneity analysis. For simpler analysis, they have been shown to contain overlapping, but also independent information. In this article, our goal is to conduct the first and more effective FMR-based cancer heterogeneity analysis by integrating high-dimensional molecular and histopathological imaging features. A penalization approach is developed to regularize estimation, select relevant variables, and, equally importantly, promote the identification of independent information. Consistency properties are rigorously established. An effective computational algorithm is developed. A simulation and an analysis of The Cancer Genome Atlas (TCGA) lung cancer data demonstrate the practical effectiveness of the proposed approach. Overall, this study provides a practical and useful new way of conducting supervised cancer heterogeneity analysis.

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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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