聚碳酸酯水解酶的新设计。

IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Protein Engineering Design & Selection Pub Date : 2023-01-21 DOI:10.1093/protein/gzad022
Laura H Holst, Niklas G Madsen, Freja T Toftgård, Freja Rønne, Ioana-Malina Moise, Evamaria I Petersen, Peter Fojan
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引用次数: 0

摘要

塑料的酶降解目前仅限于使用工程天然酶。到目前为止,所有用于塑料降解酶的工程方法都保留了天然的$\alpha $ / $\beta $ -fold。虽然突变可以用来增加热稳定性,但对于$\alpha $ / $\beta $ -fold可能存在固有的最大值。因此,在不同的蛋白质折叠中引入对塑料的催化活性以逃避塑料降解酶的序列空间是有意义的。本文描述了一种设计可降解塑料的高热稳定性酶的方法。这已经被用来设计一种酶,可以催化聚碳酸酯的水解,没有已知的天然酶可以降解。罗塞塔酶设计用于将催化三元体引入一组耐热支架。通过计算评估,选择了一个潜在的PCase,并在大肠杆菌中重组产生。CD谱分析表明,该PCase的熔融温度>95 $^{\circ }$ c,对商用聚碳酸酯(Makrolon 2808)的活性得到了AFM的证实,表明该PCase设计成功。
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De novo design of a polycarbonate hydrolase.

Enzymatic degradation of plastics is currently limited to the use of engineered natural enzymes. As of yet, all engineering approaches applied to plastic degrading enzymes retain the natural $\alpha /\beta $-fold. While mutations can be used to increase thermostability, an inherent maximum likely exists for the $\alpha /\beta $-fold. It is thus of interest to introduce catalytic activity toward plastics in a different protein fold to escape the sequence space of plastic degrading enzymes. Here, a method for designing highly thermostable enzymes that can degrade plastics is described. With the help of Rosetta an active site catalysing the hydrolysis of polycarbonate is introduced into a set of thermostable scaffolds. Through computational evaluation, a potential PCase was selected and produced recombinantly in Escherichia coli. Thermal analysis suggests that the design has a melting temperature of >95$^{\circ }$C. Activity toward polycarbonate was confirmed using atomic force spectroscopy (AFM), proving the successful design of a PCase.

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来源期刊
Protein Engineering Design & Selection
Protein Engineering Design & Selection 生物-生化与分子生物学
CiteScore
3.30
自引率
4.20%
发文量
14
审稿时长
6-12 weeks
期刊介绍: Protein Engineering, Design and Selection (PEDS) publishes high-quality research papers and review articles relevant to the engineering, design and selection of proteins for use in biotechnology and therapy, and for understanding the fundamental link between protein sequence, structure, dynamics, function, and evolution.
期刊最新文献
Optimized single-cell gates for yeast display screening. TIMED-Design: flexible and accessible protein sequence design with convolutional neural networks. Correction to: De novo design of a polycarbonate hydrolase. Interactive computational and experimental approaches improve the sensitivity of periplasmic binding protein-based nicotine biosensors for measurements in biofluids. Design of functional intrinsically disordered proteins.
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